Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2772 and HP15_2773 are separated by 14 nucleotides HP15_2773 and HP15_2774 are separated by 20 nucleotides HP15_2774 and HP15_2775 are separated by 57 nucleotides
HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310
_2772
HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780
_2773
HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448
_2774
HP15_2775: HP15_2775 - transcriptional regulator protein, LysR family, at 2,927,506 to 2,928,399
_2775
Position (kb)
2926
2927
2928 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2926.035 kb on + strand, within HP15_2772 at 2926.074 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.146 kb on - strand, within HP15_2772 at 2926.241 kb on - strand at 2926.285 kb on - strand at 2926.305 kb on - strand at 2926.316 kb on + strand at 2926.474 kb on - strand, within HP15_2773 at 2926.493 kb on + strand, within HP15_2773 at 2926.499 kb on + strand, within HP15_2773 at 2926.621 kb on + strand, within HP15_2773 at 2926.724 kb on + strand, within HP15_2773 at 2926.802 kb on + strand at 2926.872 kb on + strand, within HP15_2774 at 2926.913 kb on - strand, within HP15_2774 at 2926.988 kb on - strand, within HP15_2774 at 2927.015 kb on + strand, within HP15_2774 at 2927.028 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.107 kb on - strand, within HP15_2774 at 2927.109 kb on + strand, within HP15_2774 at 2927.241 kb on - strand, within HP15_2774 at 2927.281 kb on + strand, within HP15_2774 at 2927.301 kb on + strand, within HP15_2774 at 2927.313 kb on + strand, within HP15_2774 at 2927.363 kb on + strand, within HP15_2774 at 2927.488 kb on + strand at 2927.546 kb on - strand at 2927.556 kb on - strand at 2927.654 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775 at 2927.735 kb on - strand, within HP15_2775 at 2927.786 kb on + strand, within HP15_2775 at 2927.804 kb on - strand, within HP15_2775 at 2927.833 kb on - strand, within HP15_2775 at 2927.938 kb on + strand, within HP15_2775 at 2927.960 kb on + strand, within HP15_2775 at 2927.984 kb on - strand, within HP15_2775 at 2928.001 kb on - strand, within HP15_2775 at 2928.105 kb on + strand, within HP15_2775 at 2928.208 kb on + strand, within HP15_2775 at 2928.222 kb on - strand, within HP15_2775 at 2928.231 kb on - strand, within HP15_2775 at 2928.234 kb on - strand, within HP15_2775 at 2928.270 kb on + strand, within HP15_2775 at 2928.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 2,926,035 + HP15_2772 0.78 -0.9 2,926,074 - HP15_2772 0.81 +0.4 2,926,146 - HP15_2772 0.87 -0.2 2,926,146 - HP15_2772 0.87 -0.3 2,926,241 - +2.0 2,926,285 - +1.4 2,926,305 - +0.1 2,926,316 + +0.2 2,926,474 - HP15_2773 0.33 -0.4 2,926,493 + HP15_2773 0.37 -0.1 2,926,499 + HP15_2773 0.38 +1.0 2,926,621 + HP15_2773 0.65 +0.5 2,926,724 + HP15_2773 0.88 -0.3 2,926,802 + +1.5 2,926,872 + HP15_2774 0.11 +0.4 2,926,913 - HP15_2774 0.17 -1.1 2,926,988 - HP15_2774 0.29 -0.3 2,927,015 + HP15_2774 0.33 -0.1 2,927,028 - HP15_2774 0.35 -0.1 2,927,107 - HP15_2774 0.47 +0.0 2,927,107 - HP15_2774 0.47 -0.9 2,927,109 + HP15_2774 0.48 +0.0 2,927,241 - HP15_2774 0.68 -0.1 2,927,281 + HP15_2774 0.74 -0.1 2,927,301 + HP15_2774 0.77 -1.9 2,927,313 + HP15_2774 0.79 -1.0 2,927,363 + HP15_2774 0.87 -0.5 2,927,488 + +0.9 2,927,546 - -1.5 2,927,556 - +0.9 2,927,654 - HP15_2775 0.17 +0.1 2,927,735 - HP15_2775 0.26 -0.1 2,927,735 - HP15_2775 0.26 -0.1 2,927,786 + HP15_2775 0.31 -1.7 2,927,804 - HP15_2775 0.33 +0.9 2,927,833 - HP15_2775 0.37 -0.6 2,927,938 + HP15_2775 0.48 +1.2 2,927,960 + HP15_2775 0.51 -0.9 2,927,984 - HP15_2775 0.53 +2.6 2,928,001 - HP15_2775 0.55 -1.7 2,928,105 + HP15_2775 0.67 -0.8 2,928,208 + HP15_2775 0.79 +0.9 2,928,222 - HP15_2775 0.80 +0.0 2,928,231 - HP15_2775 0.81 +1.9 2,928,234 - HP15_2775 0.81 +1.3 2,928,270 + HP15_2775 0.85 +0.1 2,928,437 - -0.8
Or see this region's nucleotide sequence