Strain Fitness in Marinobacter adhaerens HP15 around HP15_2769

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2768 and HP15_2769 overlap by 4 nucleotidesHP15_2769 and HP15_2770 are separated by 107 nucleotides HP15_2768: HP15_2768 - membrane protein, at 2,920,347 to 2,922,854 _2768 HP15_2769: HP15_2769 - hypothetical protein, at 2,922,851 to 2,923,009 _2769 HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400 _2770 Position (kb) 2922 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2at 2921.858 kb on + strand, within HP15_2768at 2921.880 kb on - strand, within HP15_2768at 2921.893 kb on + strand, within HP15_2768at 2921.962 kb on + strand, within HP15_2768at 2921.970 kb on - strand, within HP15_2768at 2921.999 kb on - strand, within HP15_2768at 2922.028 kb on + strand, within HP15_2768at 2922.063 kb on - strand, within HP15_2768at 2922.068 kb on + strand, within HP15_2768at 2922.086 kb on + strand, within HP15_2768at 2922.094 kb on - strand, within HP15_2768at 2922.096 kb on - strand, within HP15_2768at 2922.160 kb on - strand, within HP15_2768at 2922.195 kb on - strand, within HP15_2768at 2922.202 kb on + strand, within HP15_2768at 2922.210 kb on - strand, within HP15_2768at 2922.251 kb on - strand, within HP15_2768at 2922.256 kb on + strand, within HP15_2768at 2922.269 kb on - strand, within HP15_2768at 2922.415 kb on - strand, within HP15_2768at 2922.452 kb on - strand, within HP15_2768at 2922.459 kb on + strand, within HP15_2768at 2922.469 kb on + strand, within HP15_2768at 2922.473 kb on + strand, within HP15_2768at 2922.503 kb on - strand, within HP15_2768at 2922.517 kb on - strand, within HP15_2768at 2922.560 kb on - strand, within HP15_2768at 2922.700 kb on - strandat 2922.712 kb on - strandat 2922.726 kb on + strandat 2922.841 kb on - strandat 2922.949 kb on - strand, within HP15_2769at 2923.078 kb on - strandat 2923.083 kb on + strandat 2923.083 kb on + strandat 2923.091 kb on - strandat 2923.091 kb on - strandat 2923.091 kb on - strandat 2923.097 kb on - strandat 2923.128 kb on + strandat 2923.129 kb on - strandat 2923.149 kb on - strandat 2923.154 kb on - strandat 2923.169 kb on + strandat 2923.194 kb on + strandat 2923.294 kb on + strand, within HP15_2770at 2923.317 kb on + strand, within HP15_2770at 2923.323 kb on + strand, within HP15_2770at 2923.339 kb on - strand, within HP15_2770at 2923.339 kb on - strand, within HP15_2770at 2923.341 kb on + strand, within HP15_2770at 2923.344 kb on - strand, within HP15_2770at 2923.370 kb on + strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.373 kb on - strand, within HP15_2770at 2923.383 kb on - strand, within HP15_2770at 2923.467 kb on - strand, within HP15_2770at 2923.559 kb on + strand, within HP15_2770at 2923.590 kb on + strand, within HP15_2770at 2923.599 kb on + strand, within HP15_2770at 2923.641 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.696 kb on + strand, within HP15_2770at 2923.699 kb on - strand, within HP15_2770at 2923.737 kb on + strand, within HP15_2770at 2923.849 kb on + strand, within HP15_2770at 2923.858 kb on + strand, within HP15_2770at 2923.858 kb on + strand, within HP15_2770at 2923.863 kb on + strand, within HP15_2770at 2923.871 kb on + strand, within HP15_2770at 2923.895 kb on + strand, within HP15_2770at 2923.919 kb on - strand, within HP15_2770at 2923.929 kb on - strand, within HP15_2770at 2923.975 kb on + strand, within HP15_2770at 2923.975 kb on + strand, within HP15_2770at 2923.983 kb on - strand, within HP15_2770at 2923.988 kb on - strand, within HP15_2770at 2923.990 kb on + strand, within HP15_2770at 2923.990 kb on + strand, within HP15_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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2,921,858 + HP15_2768 0.60 +1.3
2,921,880 - HP15_2768 0.61 +1.7
2,921,893 + HP15_2768 0.62 +0.1
2,921,962 + HP15_2768 0.64 +0.5
2,921,970 - HP15_2768 0.65 +1.0
2,921,999 - HP15_2768 0.66 -0.4
2,922,028 + HP15_2768 0.67 +0.9
2,922,063 - HP15_2768 0.68 +0.1
2,922,068 + HP15_2768 0.69 -0.5
2,922,086 + HP15_2768 0.69 +0.0
2,922,094 - HP15_2768 0.70 +1.1
2,922,096 - HP15_2768 0.70 -0.1
2,922,160 - HP15_2768 0.72 -1.7
2,922,195 - HP15_2768 0.74 -0.5
2,922,202 + HP15_2768 0.74 -0.4
2,922,210 - HP15_2768 0.74 -0.8
2,922,251 - HP15_2768 0.76 -0.7
2,922,256 + HP15_2768 0.76 +1.6
2,922,269 - HP15_2768 0.77 -0.4
2,922,415 - HP15_2768 0.82 +1.4
2,922,452 - HP15_2768 0.84 -0.3
2,922,459 + HP15_2768 0.84 +1.4
2,922,469 + HP15_2768 0.85 -0.8
2,922,473 + HP15_2768 0.85 -0.1
2,922,503 - HP15_2768 0.86 +0.4
2,922,517 - HP15_2768 0.87 +0.2
2,922,560 - HP15_2768 0.88 -1.2
2,922,700 - -0.7
2,922,712 - +1.1
2,922,726 + -0.8
2,922,841 - -1.7
2,922,949 - HP15_2769 0.62 -0.6
2,923,078 - +2.0
2,923,083 + -0.3
2,923,083 + -0.6
2,923,091 - -0.4
2,923,091 - +0.6
2,923,091 - -2.5
2,923,097 - +0.1
2,923,128 + +1.3
2,923,129 - -0.8
2,923,149 - -0.6
2,923,154 - -0.5
2,923,169 + +1.3
2,923,194 + +0.3
2,923,294 + HP15_2770 0.14 +0.3
2,923,317 + HP15_2770 0.16 -0.6
2,923,323 + HP15_2770 0.16 -0.1
2,923,339 - HP15_2770 0.17 +1.3
2,923,339 - HP15_2770 0.17 +0.1
2,923,341 + HP15_2770 0.17 +0.7
2,923,344 - HP15_2770 0.18 +1.3
2,923,370 + HP15_2770 0.20 +1.1
2,923,371 - HP15_2770 0.20 +0.1
2,923,371 - HP15_2770 0.20 +0.2
2,923,371 - HP15_2770 0.20 -0.0
2,923,371 - HP15_2770 0.20 +1.7
2,923,373 - HP15_2770 0.20 +0.0
2,923,383 - HP15_2770 0.21 +1.5
2,923,467 - HP15_2770 0.27 -0.5
2,923,559 + HP15_2770 0.34 -0.7
2,923,590 + HP15_2770 0.37 +1.2
2,923,599 + HP15_2770 0.38 +1.3
2,923,641 + HP15_2770 0.41 +1.0
2,923,691 + HP15_2770 0.45 +1.4
2,923,691 + HP15_2770 0.45 +0.2
2,923,696 + HP15_2770 0.45 -0.1
2,923,699 - HP15_2770 0.45 -0.1
2,923,737 + HP15_2770 0.48 +1.5
2,923,849 + HP15_2770 0.57 -0.4
2,923,858 + HP15_2770 0.58 -0.7
2,923,858 + HP15_2770 0.58 -0.0
2,923,863 + HP15_2770 0.58 +2.0
2,923,871 + HP15_2770 0.59 +0.0
2,923,895 + HP15_2770 0.61 +0.4
2,923,919 - HP15_2770 0.62 +0.9
2,923,929 - HP15_2770 0.63 +0.9
2,923,975 + HP15_2770 0.67 +0.1
2,923,975 + HP15_2770 0.67 +1.1
2,923,983 - HP15_2770 0.67 -0.4
2,923,988 - HP15_2770 0.68 +1.0
2,923,990 + HP15_2770 0.68 -0.6
2,923,990 + HP15_2770 0.68 +0.0

Or see this region's nucleotide sequence