Strain Fitness in Marinobacter adhaerens HP15 around HP15_2346

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2345 and HP15_tRNA45 are separated by 41 nucleotidesHP15_tRNA45 and HP15_tRNA46 are separated by 18 nucleotidesHP15_tRNA46 and HP15_tRNA47 are separated by 67 nucleotidesHP15_tRNA47 and HP15_2346 are separated by 161 nucleotidesHP15_2346 and HP15_2347 are separated by 26 nucleotides HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811 _2345 HP15_tRNA45: HP15_tRNA45 - tRNA-Val, at 2,469,853 to 2,469,928 _tRNA45 HP15_tRNA46: HP15_tRNA46 - tRNA-Asp, at 2,469,947 to 2,470,023 _tRNA46 HP15_tRNA47: HP15_tRNA47 - tRNA-Val, at 2,470,091 to 2,470,166 _tRNA47 HP15_2346: HP15_2346 - conserved hypothetical protein, at 2,470,328 to 2,470,609 _2346 HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508 _2347 Position (kb) 2470 2471Strain fitness (log2 ratio) -1 0 1 2 3at 2469.343 kb on - strand, within HP15_2345at 2469.387 kb on - strand, within HP15_2345at 2469.419 kb on + strand, within HP15_2345at 2469.442 kb on - strand, within HP15_2345at 2469.629 kb on + strand, within HP15_2345at 2469.653 kb on + strand, within HP15_2345at 2469.687 kb on + strandat 2469.699 kb on - strandat 2470.377 kb on + strand, within HP15_2346at 2470.923 kb on + strand, within HP15_2347at 2471.124 kb on + strand, within HP15_2347at 2471.132 kb on - strand, within HP15_2347at 2471.138 kb on - strand, within HP15_2347at 2471.149 kb on + strand, within HP15_2347at 2471.157 kb on - strand, within HP15_2347at 2471.173 kb on - strand, within HP15_2347at 2471.198 kb on - strand, within HP15_2347at 2471.198 kb on - strand, within HP15_2347at 2471.314 kb on + strand, within HP15_2347at 2471.314 kb on + strand, within HP15_2347at 2471.322 kb on - strand, within HP15_2347at 2471.322 kb on - strand, within HP15_2347at 2471.331 kb on + strand, within HP15_2347at 2471.493 kb on + strandat 2471.555 kb on - strandat 2471.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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2,469,343 - HP15_2345 0.67 +2.9
2,469,387 - HP15_2345 0.70 -0.3
2,469,419 + HP15_2345 0.72 +1.9
2,469,442 - HP15_2345 0.74 +0.4
2,469,629 + HP15_2345 0.87 -0.6
2,469,653 + HP15_2345 0.89 +1.4
2,469,687 + +1.5
2,469,699 - -1.6
2,470,377 + HP15_2346 0.17 -0.4
2,470,923 + HP15_2347 0.33 +1.2
2,471,124 + HP15_2347 0.56 +1.0
2,471,132 - HP15_2347 0.57 -0.9
2,471,138 - HP15_2347 0.58 -0.3
2,471,149 + HP15_2347 0.59 -0.7
2,471,157 - HP15_2347 0.60 -0.3
2,471,173 - HP15_2347 0.62 +0.2
2,471,198 - HP15_2347 0.64 +1.5
2,471,198 - HP15_2347 0.64 +1.3
2,471,314 + HP15_2347 0.78 +0.0
2,471,314 + HP15_2347 0.78 +0.3
2,471,322 - HP15_2347 0.79 +1.0
2,471,322 - HP15_2347 0.79 +1.3
2,471,331 + HP15_2347 0.80 +1.3
2,471,493 + -0.3
2,471,555 - +1.9
2,471,583 - +0.4

Or see this region's nucleotide sequence