Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_188 and HP15_189 are separated by 15 nucleotides HP15_189 and HP15_190 are separated by 240 nucleotides HP15_190 and HP15_191 are separated by 290 nucleotides
HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925
_188
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323
_190
HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048
_191
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.956 kb on + strand at 179.036 kb on + strand, within HP15_189 at 179.076 kb on - strand, within HP15_189 at 179.163 kb on + strand, within HP15_189 at 179.176 kb on - strand, within HP15_189 at 179.183 kb on + strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.285 kb on + strand, within HP15_189 at 179.293 kb on - strand, within HP15_189 at 179.418 kb on + strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.441 kb on + strand, within HP15_189 at 179.537 kb on - strand, within HP15_189 at 179.592 kb on - strand at 179.609 kb on - strand at 179.648 kb on - strand at 179.700 kb on - strand at 179.769 kb on + strand at 179.787 kb on - strand at 179.834 kb on - strand at 179.901 kb on + strand at 179.953 kb on + strand, within HP15_190 at 179.954 kb on - strand, within HP15_190 at 180.046 kb on - strand, within HP15_190 at 180.208 kb on - strand, within HP15_190 at 180.215 kb on + strand, within HP15_190 at 180.222 kb on - strand, within HP15_190 at 180.237 kb on + strand, within HP15_190 at 180.296 kb on + strand at 180.296 kb on + strand at 180.316 kb on - strand at 180.322 kb on + strand at 180.504 kb on - strand at 180.594 kb on - strand at 180.605 kb on + strand at 180.653 kb on + strand at 180.686 kb on - strand, within HP15_191 at 180.716 kb on + strand, within HP15_191 at 180.729 kb on - strand, within HP15_191 at 180.892 kb on - strand, within HP15_191 at 180.916 kb on + strand, within HP15_191 at 181.098 kb on - strand at 181.110 kb on + strand at 181.152 kb on + strand at 181.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 178,956 + +1.5 179,036 + HP15_189 0.14 -0.3 179,076 - HP15_189 0.19 -0.5 179,163 + HP15_189 0.32 -0.4 179,176 - HP15_189 0.34 -0.0 179,183 + HP15_189 0.35 +0.3 179,191 - HP15_189 0.36 -0.7 179,191 - HP15_189 0.36 +0.2 179,285 + HP15_189 0.49 -0.7 179,293 - HP15_189 0.51 -0.5 179,418 + HP15_189 0.69 +2.3 179,424 - HP15_189 0.69 -2.4 179,424 - HP15_189 0.69 +0.4 179,441 + HP15_189 0.72 -0.0 179,537 - HP15_189 0.86 +0.1 179,592 - -0.3 179,609 - +0.7 179,648 - +2.1 179,700 - -0.6 179,769 + +1.3 179,787 - +1.5 179,834 - -1.0 179,901 + -0.4 179,953 + HP15_190 0.17 -1.1 179,954 - HP15_190 0.17 +0.8 180,046 - HP15_190 0.38 -1.0 180,208 - HP15_190 0.74 +0.4 180,215 + HP15_190 0.76 -1.4 180,222 - HP15_190 0.77 +1.9 180,237 + HP15_190 0.81 -0.2 180,296 + -0.2 180,296 + -0.5 180,316 - +1.3 180,322 + -0.1 180,504 - +0.2 180,594 - +1.2 180,605 + -1.4 180,653 + -0.7 180,686 - HP15_191 0.17 -0.2 180,716 + HP15_191 0.23 -0.0 180,729 - HP15_191 0.26 +1.3 180,892 - HP15_191 0.64 -1.5 180,916 + HP15_191 0.69 +1.5 181,098 - +1.1 181,110 + -0.8 181,152 + +1.5 181,164 + -1.4
Or see this region's nucleotide sequence