Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1504 and HP15_1505 are separated by 103 nucleotides HP15_1505 and HP15_1506 are separated by 145 nucleotides HP15_1506 and HP15_tRNA29 overlap by 264 nucleotides HP15_tRNA29 and HP15_1507 are separated by 240 nucleotides HP15_1507 and HP15_1508 are separated by 50 nucleotides
HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258
_1504
HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964
_1505
HP15_1506: HP15_1506 - secreted protein containing YkuD domain, at 1,582,110 to 1,583,147
_1506
HP15_tRNA29: HP15_tRNA29 - tRNA-Gly, at 1,582,884 to 1,582,959
_tRNA29
HP15_1507: HP15_1507 - MOSC domain protein beta barrel domain protein, at 1,583,200 to 1,583,889
_1507
HP15_1508: HP15_1508 - ABC transporter ATPase component, at 1,583,940 to 1,585,850
_1508
Position (kb)
1582
1583
1584 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1581.132 kb on + strand, within HP15_1504 at 1581.466 kb on - strand, within HP15_1505 at 1581.473 kb on - strand at 1581.665 kb on - strand, within HP15_1505 at 1581.674 kb on + strand, within HP15_1505 at 1581.739 kb on + strand, within HP15_1505 at 1581.754 kb on + strand, within HP15_1505 at 1581.798 kb on + strand, within HP15_1505 at 1581.959 kb on + strand at 1581.959 kb on - strand at 1581.969 kb on + strand at 1582.287 kb on + strand, within HP15_1506 at 1582.295 kb on - strand, within HP15_1506 at 1582.473 kb on - strand, within HP15_1506 at 1582.480 kb on + strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.483 kb on - strand, within HP15_1506 at 1582.656 kb on - strand, within HP15_1506 at 1582.725 kb on - strand, within HP15_1506 at 1582.746 kb on - strand, within HP15_1506 at 1583.053 kb on - strand at 1583.149 kb on - strand at 1583.369 kb on + strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.462 kb on - strand, within HP15_1507 at 1583.609 kb on - strand, within HP15_1507 at 1583.641 kb on + strand, within HP15_1507 at 1583.671 kb on + strand, within HP15_1507 at 1583.711 kb on + strand, within HP15_1507 at 1583.719 kb on - strand, within HP15_1507 at 1583.779 kb on - strand, within HP15_1507 at 1583.786 kb on + strand, within HP15_1507 at 1583.960 kb on + strand at 1583.968 kb on - strand at 1583.995 kb on - strand at 1584.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 1,581,132 + HP15_1504 0.66 -1.6 1,581,466 - HP15_1505 0.17 +0.3 1,581,473 - +1.0 1,581,665 - HP15_1505 0.50 -0.2 1,581,674 + HP15_1505 0.52 +1.0 1,581,739 + HP15_1505 0.63 +0.2 1,581,754 + HP15_1505 0.65 -0.2 1,581,798 + HP15_1505 0.72 +1.2 1,581,959 + +1.5 1,581,959 - +1.1 1,581,969 + +0.0 1,582,287 + HP15_1506 0.17 -1.6 1,582,295 - HP15_1506 0.18 +1.3 1,582,473 - HP15_1506 0.35 +0.7 1,582,480 + HP15_1506 0.36 -0.2 1,582,483 - HP15_1506 0.36 -0.6 1,582,483 - HP15_1506 0.36 -1.9 1,582,483 - HP15_1506 0.36 +2.1 1,582,656 - HP15_1506 0.53 +0.7 1,582,725 - HP15_1506 0.59 -1.9 1,582,746 - HP15_1506 0.61 -1.0 1,583,053 - +2.3 1,583,149 - -0.1 1,583,369 + HP15_1507 0.24 -0.8 1,583,462 - HP15_1507 0.38 +0.3 1,583,462 - HP15_1507 0.38 +1.1 1,583,609 - HP15_1507 0.59 -1.2 1,583,641 + HP15_1507 0.64 -0.3 1,583,671 + HP15_1507 0.68 -0.4 1,583,711 + HP15_1507 0.74 +1.6 1,583,719 - HP15_1507 0.75 +0.2 1,583,779 - HP15_1507 0.84 -0.7 1,583,786 + HP15_1507 0.85 +1.2 1,583,960 + -1.7 1,583,968 - +1.0 1,583,995 - +1.3 1,584,096 + +0.6
Or see this region's nucleotide sequence