Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1422 and HP15_1423 are separated by 88 nucleotides HP15_1423 and HP15_1424 are separated by 64 nucleotides HP15_1424 and HP15_1425 are separated by 113 nucleotides HP15_1425 and HP15_1426 are separated by 66 nucleotides
HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087
_1422
HP15_1423: HP15_1423 - conserved hypothetical protein, secreted, at 1,506,176 to 1,506,568
_1423
HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334
_1424
HP15_1425: HP15_1425 - conserved hypothetical protein, secreted, at 1,507,448 to 1,507,876
_1425
HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941
_1426
Position (kb)
1506
1507
1508 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1505.644 kb on + strand, within HP15_1422 at 1505.815 kb on - strand, within HP15_1422 at 1505.820 kb on - strand, within HP15_1422 at 1505.867 kb on + strand, within HP15_1422 at 1505.875 kb on - strand, within HP15_1422 at 1505.887 kb on + strand, within HP15_1422 at 1505.926 kb on + strand, within HP15_1422 at 1505.964 kb on + strand, within HP15_1422 at 1506.198 kb on + strand at 1506.198 kb on + strand at 1506.316 kb on - strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.357 kb on - strand, within HP15_1423 at 1506.374 kb on + strand, within HP15_1423 at 1506.437 kb on - strand, within HP15_1423 at 1506.473 kb on - strand, within HP15_1423 at 1506.636 kb on + strand at 1506.702 kb on - strand at 1506.771 kb on - strand, within HP15_1424 at 1506.827 kb on + strand, within HP15_1424 at 1506.849 kb on + strand, within HP15_1424 at 1507.114 kb on + strand, within HP15_1424 at 1507.122 kb on - strand, within HP15_1424 at 1507.122 kb on - strand, within HP15_1424 at 1507.151 kb on + strand, within HP15_1424 at 1507.151 kb on + strand, within HP15_1424 at 1507.337 kb on + strand at 1507.419 kb on + strand at 1507.422 kb on - strand at 1507.438 kb on + strand at 1507.438 kb on + strand at 1507.446 kb on - strand at 1507.578 kb on + strand, within HP15_1425 at 1507.614 kb on + strand, within HP15_1425 at 1507.701 kb on - strand, within HP15_1425 at 1507.845 kb on + strand at 1507.853 kb on - strand at 1508.029 kb on + strand at 1508.037 kb on - strand at 1508.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 1,505,644 + HP15_1422 0.39 +1.2 1,505,815 - HP15_1422 0.62 -0.5 1,505,820 - HP15_1422 0.63 +0.0 1,505,867 + HP15_1422 0.69 +0.2 1,505,875 - HP15_1422 0.71 +1.6 1,505,887 + HP15_1422 0.72 +1.6 1,505,926 + HP15_1422 0.78 +2.1 1,505,964 + HP15_1422 0.83 +0.0 1,506,198 + +1.6 1,506,198 + +0.1 1,506,316 - HP15_1423 0.36 -0.2 1,506,335 + HP15_1423 0.40 -0.8 1,506,335 + HP15_1423 0.40 -0.9 1,506,357 - HP15_1423 0.46 -0.8 1,506,374 + HP15_1423 0.50 +0.1 1,506,437 - HP15_1423 0.66 -0.4 1,506,473 - HP15_1423 0.76 +0.9 1,506,636 + +0.9 1,506,702 - +0.4 1,506,771 - HP15_1424 0.20 -1.2 1,506,827 + HP15_1424 0.28 +1.8 1,506,849 + HP15_1424 0.31 +0.2 1,507,114 + HP15_1424 0.69 -0.8 1,507,122 - HP15_1424 0.70 -0.6 1,507,122 - HP15_1424 0.70 -0.4 1,507,151 + HP15_1424 0.74 -0.5 1,507,151 + HP15_1424 0.74 -0.2 1,507,337 + -0.3 1,507,419 + +1.4 1,507,422 - +1.6 1,507,438 + -0.9 1,507,438 + -0.3 1,507,446 - -1.7 1,507,578 + HP15_1425 0.30 -0.1 1,507,614 + HP15_1425 0.39 +0.7 1,507,701 - HP15_1425 0.59 +0.8 1,507,845 + -0.7 1,507,853 - +1.5 1,508,029 + -0.2 1,508,037 - +0.8 1,508,037 - -2.1
Or see this region's nucleotide sequence