Strain Fitness in Marinobacter adhaerens HP15 around HP15_1424

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1422 and HP15_1423 are separated by 88 nucleotidesHP15_1423 and HP15_1424 are separated by 64 nucleotidesHP15_1424 and HP15_1425 are separated by 113 nucleotidesHP15_1425 and HP15_1426 are separated by 66 nucleotides HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087 _1422 HP15_1423: HP15_1423 - conserved hypothetical protein, secreted, at 1,506,176 to 1,506,568 _1423 HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334 _1424 HP15_1425: HP15_1425 - conserved hypothetical protein, secreted, at 1,507,448 to 1,507,876 _1425 HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941 _1426 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -2 -1 0 1 2at 1505.644 kb on + strand, within HP15_1422at 1505.815 kb on - strand, within HP15_1422at 1505.820 kb on - strand, within HP15_1422at 1505.867 kb on + strand, within HP15_1422at 1505.875 kb on - strand, within HP15_1422at 1505.887 kb on + strand, within HP15_1422at 1505.926 kb on + strand, within HP15_1422at 1505.964 kb on + strand, within HP15_1422at 1506.198 kb on + strandat 1506.198 kb on + strandat 1506.316 kb on - strand, within HP15_1423at 1506.335 kb on + strand, within HP15_1423at 1506.335 kb on + strand, within HP15_1423at 1506.357 kb on - strand, within HP15_1423at 1506.374 kb on + strand, within HP15_1423at 1506.437 kb on - strand, within HP15_1423at 1506.473 kb on - strand, within HP15_1423at 1506.636 kb on + strandat 1506.702 kb on - strandat 1506.771 kb on - strand, within HP15_1424at 1506.827 kb on + strand, within HP15_1424at 1506.849 kb on + strand, within HP15_1424at 1507.114 kb on + strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.337 kb on + strandat 1507.419 kb on + strandat 1507.422 kb on - strandat 1507.438 kb on + strandat 1507.438 kb on + strandat 1507.446 kb on - strandat 1507.578 kb on + strand, within HP15_1425at 1507.614 kb on + strand, within HP15_1425at 1507.701 kb on - strand, within HP15_1425at 1507.845 kb on + strandat 1507.853 kb on - strandat 1508.029 kb on + strandat 1508.037 kb on - strandat 1508.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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1,505,644 + HP15_1422 0.39 +1.2
1,505,815 - HP15_1422 0.62 -0.5
1,505,820 - HP15_1422 0.63 +0.0
1,505,867 + HP15_1422 0.69 +0.2
1,505,875 - HP15_1422 0.71 +1.6
1,505,887 + HP15_1422 0.72 +1.6
1,505,926 + HP15_1422 0.78 +2.1
1,505,964 + HP15_1422 0.83 +0.0
1,506,198 + +1.6
1,506,198 + +0.1
1,506,316 - HP15_1423 0.36 -0.2
1,506,335 + HP15_1423 0.40 -0.8
1,506,335 + HP15_1423 0.40 -0.9
1,506,357 - HP15_1423 0.46 -0.8
1,506,374 + HP15_1423 0.50 +0.1
1,506,437 - HP15_1423 0.66 -0.4
1,506,473 - HP15_1423 0.76 +0.9
1,506,636 + +0.9
1,506,702 - +0.4
1,506,771 - HP15_1424 0.20 -1.2
1,506,827 + HP15_1424 0.28 +1.8
1,506,849 + HP15_1424 0.31 +0.2
1,507,114 + HP15_1424 0.69 -0.8
1,507,122 - HP15_1424 0.70 -0.6
1,507,122 - HP15_1424 0.70 -0.4
1,507,151 + HP15_1424 0.74 -0.5
1,507,151 + HP15_1424 0.74 -0.2
1,507,337 + -0.3
1,507,419 + +1.4
1,507,422 - +1.6
1,507,438 + -0.9
1,507,438 + -0.3
1,507,446 - -1.7
1,507,578 + HP15_1425 0.30 -0.1
1,507,614 + HP15_1425 0.39 +0.7
1,507,701 - HP15_1425 0.59 +0.8
1,507,845 + -0.7
1,507,853 - +1.5
1,508,029 + -0.2
1,508,037 - +0.8
1,508,037 - -2.1

Or see this region's nucleotide sequence