Experiment: D-Trehalose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1143 and HP15_1144 are separated by 79 nucleotides HP15_1144 and HP15_1145 are separated by 57 nucleotides
HP15_1143: HP15_1143 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit, at 1,175,987 to 1,177,501
_1143
HP15_1144: HP15_1144 - protein belonging to uncharacterized protein family UPF0061, at 1,177,581 to 1,179,035
_1144
HP15_1145: HP15_1145 - conserved hypothetical protein, at 1,179,093 to 1,180,049
_1145
Position (kb)
1177
1178
1179
1180 Strain fitness (log2 ratio)
-1
0
1
2 at 1177.668 kb on - strand at 1177.897 kb on + strand, within HP15_1144 at 1177.900 kb on - strand, within HP15_1144 at 1177.906 kb on - strand, within HP15_1144 at 1177.996 kb on - strand, within HP15_1144 at 1178.002 kb on - strand, within HP15_1144 at 1178.110 kb on + strand, within HP15_1144 at 1178.110 kb on + strand, within HP15_1144 at 1178.115 kb on + strand, within HP15_1144 at 1178.123 kb on - strand, within HP15_1144 at 1178.289 kb on + strand, within HP15_1144 at 1178.400 kb on + strand, within HP15_1144 at 1178.410 kb on + strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144 at 1178.505 kb on + strand, within HP15_1144 at 1178.631 kb on - strand, within HP15_1144 at 1178.932 kb on - strand at 1178.962 kb on + strand at 1178.969 kb on - strand at 1179.078 kb on + strand at 1179.170 kb on - strand at 1179.189 kb on + strand, within HP15_1145 at 1179.281 kb on + strand, within HP15_1145 at 1179.378 kb on - strand, within HP15_1145 at 1179.387 kb on + strand, within HP15_1145 at 1179.398 kb on + strand, within HP15_1145 at 1179.443 kb on + strand, within HP15_1145 at 1179.485 kb on - strand, within HP15_1145 at 1179.499 kb on - strand, within HP15_1145 at 1179.596 kb on + strand, within HP15_1145 at 1179.612 kb on + strand, within HP15_1145 at 1179.619 kb on + strand, within HP15_1145 at 1179.636 kb on + strand, within HP15_1145 at 1179.644 kb on - strand, within HP15_1145 at 1179.644 kb on - strand, within HP15_1145 at 1179.998 kb on - strand at 1180.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose remove 1,177,668 - +0.6 1,177,897 + HP15_1144 0.22 +0.9 1,177,900 - HP15_1144 0.22 -0.7 1,177,906 - HP15_1144 0.22 +1.2 1,177,996 - HP15_1144 0.29 +1.3 1,178,002 - HP15_1144 0.29 -1.4 1,178,110 + HP15_1144 0.36 -0.4 1,178,110 + HP15_1144 0.36 -0.4 1,178,115 + HP15_1144 0.37 +1.7 1,178,123 - HP15_1144 0.37 -0.2 1,178,289 + HP15_1144 0.49 +0.4 1,178,400 + HP15_1144 0.56 +0.4 1,178,410 + HP15_1144 0.57 -0.1 1,178,413 - HP15_1144 0.57 -0.5 1,178,413 - HP15_1144 0.57 +1.8 1,178,413 - HP15_1144 0.57 +0.5 1,178,505 + HP15_1144 0.64 +0.8 1,178,631 - HP15_1144 0.72 +1.2 1,178,932 - +1.6 1,178,962 + -1.2 1,178,969 - +1.0 1,179,078 + -0.8 1,179,170 - -0.4 1,179,189 + HP15_1145 0.10 +0.6 1,179,281 + HP15_1145 0.20 -0.7 1,179,378 - HP15_1145 0.30 -1.4 1,179,387 + HP15_1145 0.31 +0.9 1,179,398 + HP15_1145 0.32 -0.4 1,179,443 + HP15_1145 0.37 -1.4 1,179,485 - HP15_1145 0.41 -0.8 1,179,499 - HP15_1145 0.42 +0.6 1,179,596 + HP15_1145 0.53 +0.4 1,179,612 + HP15_1145 0.54 -1.4 1,179,619 + HP15_1145 0.55 +0.7 1,179,636 + HP15_1145 0.57 +0.0 1,179,644 - HP15_1145 0.58 -0.1 1,179,644 - HP15_1145 0.58 -0.8 1,179,998 - +1.6 1,180,003 - -0.4
Or see this region's nucleotide sequence