Strain Fitness in Marinobacter adhaerens HP15 around HP15_1144

Experiment: D-Trehalose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1143 and HP15_1144 are separated by 79 nucleotidesHP15_1144 and HP15_1145 are separated by 57 nucleotides HP15_1143: HP15_1143 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit, at 1,175,987 to 1,177,501 _1143 HP15_1144: HP15_1144 - protein belonging to uncharacterized protein family UPF0061, at 1,177,581 to 1,179,035 _1144 HP15_1145: HP15_1145 - conserved hypothetical protein, at 1,179,093 to 1,180,049 _1145 Position (kb) 1177 1178 1179 1180Strain fitness (log2 ratio) -1 0 1 2at 1177.668 kb on - strandat 1177.897 kb on + strand, within HP15_1144at 1177.900 kb on - strand, within HP15_1144at 1177.906 kb on - strand, within HP15_1144at 1177.996 kb on - strand, within HP15_1144at 1178.002 kb on - strand, within HP15_1144at 1178.110 kb on + strand, within HP15_1144at 1178.110 kb on + strand, within HP15_1144at 1178.115 kb on + strand, within HP15_1144at 1178.123 kb on - strand, within HP15_1144at 1178.289 kb on + strand, within HP15_1144at 1178.400 kb on + strand, within HP15_1144at 1178.410 kb on + strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144at 1178.505 kb on + strand, within HP15_1144at 1178.631 kb on - strand, within HP15_1144at 1178.932 kb on - strandat 1178.962 kb on + strandat 1178.969 kb on - strandat 1179.078 kb on + strandat 1179.170 kb on - strandat 1179.189 kb on + strand, within HP15_1145at 1179.281 kb on + strand, within HP15_1145at 1179.378 kb on - strand, within HP15_1145at 1179.387 kb on + strand, within HP15_1145at 1179.398 kb on + strand, within HP15_1145at 1179.443 kb on + strand, within HP15_1145at 1179.485 kb on - strand, within HP15_1145at 1179.499 kb on - strand, within HP15_1145at 1179.596 kb on + strand, within HP15_1145at 1179.612 kb on + strand, within HP15_1145at 1179.619 kb on + strand, within HP15_1145at 1179.636 kb on + strand, within HP15_1145at 1179.644 kb on - strand, within HP15_1145at 1179.644 kb on - strand, within HP15_1145at 1179.998 kb on - strandat 1180.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose
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1,177,668 - +0.6
1,177,897 + HP15_1144 0.22 +0.9
1,177,900 - HP15_1144 0.22 -0.7
1,177,906 - HP15_1144 0.22 +1.2
1,177,996 - HP15_1144 0.29 +1.3
1,178,002 - HP15_1144 0.29 -1.4
1,178,110 + HP15_1144 0.36 -0.4
1,178,110 + HP15_1144 0.36 -0.4
1,178,115 + HP15_1144 0.37 +1.7
1,178,123 - HP15_1144 0.37 -0.2
1,178,289 + HP15_1144 0.49 +0.4
1,178,400 + HP15_1144 0.56 +0.4
1,178,410 + HP15_1144 0.57 -0.1
1,178,413 - HP15_1144 0.57 -0.5
1,178,413 - HP15_1144 0.57 +1.8
1,178,413 - HP15_1144 0.57 +0.5
1,178,505 + HP15_1144 0.64 +0.8
1,178,631 - HP15_1144 0.72 +1.2
1,178,932 - +1.6
1,178,962 + -1.2
1,178,969 - +1.0
1,179,078 + -0.8
1,179,170 - -0.4
1,179,189 + HP15_1145 0.10 +0.6
1,179,281 + HP15_1145 0.20 -0.7
1,179,378 - HP15_1145 0.30 -1.4
1,179,387 + HP15_1145 0.31 +0.9
1,179,398 + HP15_1145 0.32 -0.4
1,179,443 + HP15_1145 0.37 -1.4
1,179,485 - HP15_1145 0.41 -0.8
1,179,499 - HP15_1145 0.42 +0.6
1,179,596 + HP15_1145 0.53 +0.4
1,179,612 + HP15_1145 0.54 -1.4
1,179,619 + HP15_1145 0.55 +0.7
1,179,636 + HP15_1145 0.57 +0.0
1,179,644 - HP15_1145 0.58 -0.1
1,179,644 - HP15_1145 0.58 -0.8
1,179,998 - +1.6
1,180,003 - -0.4

Or see this region's nucleotide sequence