Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26870 and BWI76_RS26875 are separated by 10 nucleotides BWI76_RS26875 and BWI76_RS26880 are separated by 9 nucleotides BWI76_RS26880 and BWI76_RS26885 are separated by 107 nucleotides
BWI76_RS26870: BWI76_RS26870 - dipeptide ABC transporter ATP-binding protein, at 5,574,521 to 5,575,504
_RS26870
BWI76_RS26875: BWI76_RS26875 - dipeptide ABC transporter permease DppC, at 5,575,515 to 5,576,417
_RS26875
BWI76_RS26880: BWI76_RS26880 - dipeptide ABC transporter permease DppB, at 5,576,427 to 5,577,446
_RS26880
BWI76_RS26885: BWI76_RS26885 - ABC transporter substrate-binding protein, at 5,577,554 to 5,579,161
_RS26885
Position (kb) 5576
5577
5578 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5575.526 kb on + strand at 5575.550 kb on + strand at 5575.565 kb on + strand at 5575.667 kb on + strand, within BWI76_RS26875 at 5575.766 kb on + strand, within BWI76_RS26875 at 5575.868 kb on + strand, within BWI76_RS26875 at 5576.093 kb on + strand, within BWI76_RS26875 at 5576.093 kb on + strand, within BWI76_RS26875 at 5576.310 kb on - strand at 5576.458 kb on - strand at 5576.469 kb on - strand at 5576.565 kb on - strand, within BWI76_RS26880 at 5576.619 kb on + strand, within BWI76_RS26880 at 5576.622 kb on - strand, within BWI76_RS26880 at 5576.674 kb on - strand, within BWI76_RS26880 at 5576.744 kb on - strand, within BWI76_RS26880 at 5576.744 kb on - strand, within BWI76_RS26880 at 5576.828 kb on + strand, within BWI76_RS26880 at 5576.828 kb on + strand, within BWI76_RS26880 at 5576.891 kb on + strand, within BWI76_RS26880 at 5576.891 kb on + strand, within BWI76_RS26880 at 5576.974 kb on + strand, within BWI76_RS26880 at 5577.151 kb on - strand, within BWI76_RS26880 at 5577.151 kb on - strand, within BWI76_RS26880 at 5577.163 kb on - strand, within BWI76_RS26880 at 5577.210 kb on + strand, within BWI76_RS26880 at 5577.535 kb on - strand at 5577.609 kb on + strand at 5577.617 kb on - strand at 5577.647 kb on - strand at 5577.764 kb on - strand, within BWI76_RS26885 at 5577.813 kb on + strand, within BWI76_RS26885 at 5578.058 kb on - strand, within BWI76_RS26885 at 5578.228 kb on - strand, within BWI76_RS26885 at 5578.228 kb on - strand, within BWI76_RS26885 at 5578.229 kb on - strand, within BWI76_RS26885 at 5578.237 kb on + strand, within BWI76_RS26885 at 5578.284 kb on + strand, within BWI76_RS26885 at 5578.302 kb on - strand, within BWI76_RS26885 at 5578.314 kb on + strand, within BWI76_RS26885 at 5578.406 kb on - strand, within BWI76_RS26885 at 5578.414 kb on + strand, within BWI76_RS26885 at 5578.422 kb on - strand, within BWI76_RS26885 at 5578.422 kb on - strand, within BWI76_RS26885
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 5,575,526 + +0.3 5,575,550 + -4.8 5,575,565 + -0.3 5,575,667 + BWI76_RS26875 0.17 -1.8 5,575,766 + BWI76_RS26875 0.28 -1.9 5,575,868 + BWI76_RS26875 0.39 -0.0 5,576,093 + BWI76_RS26875 0.64 -0.2 5,576,093 + BWI76_RS26875 0.64 -0.1 5,576,310 - +3.0 5,576,458 - -0.9 5,576,469 - -1.1 5,576,565 - BWI76_RS26880 0.14 -3.1 5,576,619 + BWI76_RS26880 0.19 -4.7 5,576,622 - BWI76_RS26880 0.19 -3.9 5,576,674 - BWI76_RS26880 0.24 -0.1 5,576,744 - BWI76_RS26880 0.31 -2.4 5,576,744 - BWI76_RS26880 0.31 -0.8 5,576,828 + BWI76_RS26880 0.39 -1.3 5,576,828 + BWI76_RS26880 0.39 -0.9 5,576,891 + BWI76_RS26880 0.45 -2.9 5,576,891 + BWI76_RS26880 0.45 -0.7 5,576,974 + BWI76_RS26880 0.54 -1.0 5,577,151 - BWI76_RS26880 0.71 +0.4 5,577,151 - BWI76_RS26880 0.71 -2.0 5,577,163 - BWI76_RS26880 0.72 -2.3 5,577,210 + BWI76_RS26880 0.77 -2.7 5,577,535 - -1.2 5,577,609 + +0.7 5,577,617 - -0.8 5,577,647 - -0.9 5,577,764 - BWI76_RS26885 0.13 -0.0 5,577,813 + BWI76_RS26885 0.16 -1.0 5,578,058 - BWI76_RS26885 0.31 -1.3 5,578,228 - BWI76_RS26885 0.42 -2.6 5,578,228 - BWI76_RS26885 0.42 -4.9 5,578,229 - BWI76_RS26885 0.42 -4.5 5,578,237 + BWI76_RS26885 0.42 -4.9 5,578,284 + BWI76_RS26885 0.45 +0.2 5,578,302 - BWI76_RS26885 0.47 -0.3 5,578,314 + BWI76_RS26885 0.47 +0.4 5,578,406 - BWI76_RS26885 0.53 -1.3 5,578,414 + BWI76_RS26885 0.53 -4.1 5,578,422 - BWI76_RS26885 0.54 +0.2 5,578,422 - BWI76_RS26885 0.54 -1.1
Or see this region's nucleotide sequence