Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25300 and BWI76_RS25305 are separated by 142 nucleotides BWI76_RS25305 and BWI76_RS25310 are separated by 60 nucleotides BWI76_RS25310 and BWI76_RS25315 are separated by 415 nucleotides
BWI76_RS25300: BWI76_RS25300 - hybrid sensor histidine kinase/response regulator, at 5,256,977 to 5,259,316
_RS25300
BWI76_RS25305: BWI76_RS25305 - TIGR01212 family radical SAM protein, at 5,259,459 to 5,260,394
_RS25305
BWI76_RS25310: BWI76_RS25310 - hypothetical protein, at 5,260,455 to 5,260,652
_RS25310
BWI76_RS25315: BWI76_RS25315 - glutamate synthase large subunit, at 5,261,068 to 5,265,528
_RS25315
Position (kb)
5259
5260
5261 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 5258.587 kb on + strand, within BWI76_RS25300 at 5258.761 kb on + strand, within BWI76_RS25300 at 5258.990 kb on - strand, within BWI76_RS25300 at 5259.039 kb on - strand, within BWI76_RS25300 at 5259.105 kb on - strand at 5259.170 kb on - strand at 5259.189 kb on - strand at 5259.282 kb on + strand at 5259.290 kb on - strand at 5259.290 kb on - strand at 5259.416 kb on + strand at 5259.439 kb on + strand at 5259.512 kb on - strand at 5259.568 kb on + strand, within BWI76_RS25305 at 5259.571 kb on - strand, within BWI76_RS25305 at 5259.718 kb on - strand, within BWI76_RS25305 at 5259.758 kb on + strand, within BWI76_RS25305 at 5259.766 kb on - strand, within BWI76_RS25305 at 5259.937 kb on + strand, within BWI76_RS25305 at 5259.969 kb on + strand, within BWI76_RS25305 at 5259.985 kb on + strand, within BWI76_RS25305 at 5260.709 kb on - strand at 5260.709 kb on - strand at 5260.716 kb on + strand at 5260.718 kb on - strand at 5260.824 kb on - strand at 5260.855 kb on + strand at 5260.866 kb on + strand at 5260.981 kb on + strand at 5260.995 kb on + strand at 5261.038 kb on + strand at 5261.042 kb on + strand at 5261.047 kb on + strand at 5261.085 kb on - strand at 5261.161 kb on + strand at 5261.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 5,258,587 + BWI76_RS25300 0.69 -0.2 5,258,761 + BWI76_RS25300 0.76 -1.0 5,258,990 - BWI76_RS25300 0.86 +0.9 5,259,039 - BWI76_RS25300 0.88 -2.2 5,259,105 - -2.8 5,259,170 - +2.9 5,259,189 - -1.2 5,259,282 + +0.0 5,259,290 - -0.6 5,259,290 - -3.3 5,259,416 + -0.2 5,259,439 + +0.6 5,259,512 - +1.1 5,259,568 + BWI76_RS25305 0.12 -2.8 5,259,571 - BWI76_RS25305 0.12 -1.1 5,259,718 - BWI76_RS25305 0.28 -2.7 5,259,758 + BWI76_RS25305 0.32 -1.7 5,259,766 - BWI76_RS25305 0.33 +0.1 5,259,937 + BWI76_RS25305 0.51 -4.1 5,259,969 + BWI76_RS25305 0.54 -0.5 5,259,985 + BWI76_RS25305 0.56 -1.5 5,260,709 - -1.4 5,260,709 - -0.8 5,260,716 + +0.6 5,260,718 - -0.7 5,260,824 - +1.8 5,260,855 + -1.9 5,260,866 + -0.7 5,260,981 + -0.1 5,260,995 + -0.4 5,261,038 + -1.0 5,261,042 + +1.1 5,261,047 + -0.4 5,261,085 - -0.9 5,261,161 + -5.2 5,261,183 - -4.8
Or see this region's nucleotide sequence