Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23190

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23180 and BWI76_RS23185 are separated by 2 nucleotidesBWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotidesBWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotidesBWI76_RS23195 and BWI76_RS23200 overlap by 16 nucleotides BWI76_RS23180: BWI76_RS23180 - NADH dehydrogenase, at 4,829,478 to 4,830,833 _RS23180 BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390 _RS23185 BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740 _RS23190 BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197 _RS23195 BWI76_RS23200: BWI76_RS23200 - propionate kinase, at 4,832,182 to 4,833,396 _RS23200 Position (kb) 4831 4832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4830.393 kb on + strand, within BWI76_RS23180at 4830.401 kb on - strand, within BWI76_RS23180at 4830.669 kb on + strand, within BWI76_RS23180at 4830.684 kb on + strand, within BWI76_RS23180at 4830.821 kb on + strandat 4830.890 kb on - strandat 4831.000 kb on - strand, within BWI76_RS23185at 4831.077 kb on - strand, within BWI76_RS23185at 4831.094 kb on + strand, within BWI76_RS23185at 4831.420 kb on + strandat 4831.420 kb on + strandat 4831.428 kb on - strand, within BWI76_RS23190at 4831.469 kb on - strand, within BWI76_RS23190at 4831.538 kb on + strand, within BWI76_RS23190at 4831.538 kb on + strand, within BWI76_RS23190at 4831.903 kb on + strand, within BWI76_RS23195at 4831.911 kb on - strand, within BWI76_RS23195at 4831.921 kb on - strand, within BWI76_RS23195at 4832.055 kb on - strand, within BWI76_RS23195at 4832.177 kb on + strandat 4832.253 kb on + strandat 4832.455 kb on + strand, within BWI76_RS23200at 4832.711 kb on + strand, within BWI76_RS23200

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,830,393 + BWI76_RS23180 0.67 +0.2
4,830,401 - BWI76_RS23180 0.68 +0.7
4,830,669 + BWI76_RS23180 0.88 -1.4
4,830,684 + BWI76_RS23180 0.89 -1.2
4,830,821 + +4.8
4,830,890 - -3.4
4,831,000 - BWI76_RS23185 0.30 +1.3
4,831,077 - BWI76_RS23185 0.43 +0.8
4,831,094 + BWI76_RS23185 0.46 +0.1
4,831,420 + -1.4
4,831,420 + -0.2
4,831,428 - BWI76_RS23190 0.11 -0.1
4,831,469 - BWI76_RS23190 0.23 -1.3
4,831,538 + BWI76_RS23190 0.42 -0.6
4,831,538 + BWI76_RS23190 0.42 -1.5
4,831,903 + BWI76_RS23195 0.35 +1.8
4,831,911 - BWI76_RS23195 0.37 +0.8
4,831,921 - BWI76_RS23195 0.39 +3.5
4,832,055 - BWI76_RS23195 0.68 -0.3
4,832,177 + +0.4
4,832,253 + +1.0
4,832,455 + BWI76_RS23200 0.22 -0.0
4,832,711 + BWI76_RS23200 0.44 -0.4

Or see this region's nucleotide sequence