Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21750

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21745 and BWI76_RS21750 are separated by 141 nucleotidesBWI76_RS21750 and BWI76_RS21755 are separated by 14 nucleotidesBWI76_RS21755 and BWI76_RS21760 are separated by 100 nucleotides BWI76_RS21745: BWI76_RS21745 - LysR family transcriptional regulator, at 4,544,950 to 4,545,837 _RS21745 BWI76_RS21750: BWI76_RS21750 - amidohydrolase family protein, at 4,545,979 to 4,547,376 _RS21750 BWI76_RS21755: BWI76_RS21755 - hypothetical protein, at 4,547,391 to 4,547,864 _RS21755 BWI76_RS21760: BWI76_RS21760 - SMP-30/gluconolactonase/LRE family protein, at 4,547,965 to 4,548,825 _RS21760 Position (kb) 4545 4546 4547 4548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4545.017 kb on + strandat 4545.025 kb on - strandat 4545.049 kb on - strand, within BWI76_RS21745at 4545.083 kb on - strand, within BWI76_RS21745at 4545.176 kb on + strand, within BWI76_RS21745at 4545.185 kb on + strand, within BWI76_RS21745at 4545.194 kb on + strand, within BWI76_RS21745at 4545.202 kb on - strand, within BWI76_RS21745at 4545.299 kb on - strand, within BWI76_RS21745at 4545.336 kb on + strandat 4545.381 kb on + strand, within BWI76_RS21745at 4545.418 kb on + strand, within BWI76_RS21745at 4545.418 kb on + strandat 4545.426 kb on - strand, within BWI76_RS21745at 4545.427 kb on + strand, within BWI76_RS21745at 4545.428 kb on + strand, within BWI76_RS21745at 4545.515 kb on - strandat 4545.646 kb on - strand, within BWI76_RS21745at 4545.660 kb on + strand, within BWI76_RS21745at 4545.668 kb on - strand, within BWI76_RS21745at 4545.668 kb on - strand, within BWI76_RS21745at 4545.673 kb on - strand, within BWI76_RS21745at 4545.673 kb on - strand, within BWI76_RS21745at 4545.702 kb on + strand, within BWI76_RS21745at 4545.821 kb on + strandat 4545.846 kb on + strandat 4545.848 kb on + strandat 4545.848 kb on + strandat 4546.041 kb on - strandat 4546.059 kb on - strandat 4546.067 kb on - strandat 4546.083 kb on + strandat 4546.111 kb on + strandat 4546.126 kb on + strand, within BWI76_RS21750at 4546.137 kb on + strand, within BWI76_RS21750at 4546.697 kb on + strand, within BWI76_RS21750at 4546.736 kb on + strand, within BWI76_RS21750at 4546.744 kb on - strand, within BWI76_RS21750at 4546.781 kb on + strand, within BWI76_RS21750at 4546.801 kb on - strand, within BWI76_RS21750at 4546.913 kb on + strand, within BWI76_RS21750at 4547.043 kb on + strand, within BWI76_RS21750at 4547.050 kb on + strand, within BWI76_RS21750at 4547.119 kb on - strand, within BWI76_RS21750at 4547.248 kb on + strandat 4547.256 kb on - strandat 4547.434 kb on + strandat 4547.451 kb on + strand, within BWI76_RS21755at 4547.520 kb on + strand, within BWI76_RS21755at 4547.570 kb on - strand, within BWI76_RS21755at 4547.645 kb on - strand, within BWI76_RS21755at 4547.747 kb on + strand, within BWI76_RS21755at 4547.760 kb on - strand, within BWI76_RS21755at 4547.926 kb on - strandat 4548.139 kb on - strand, within BWI76_RS21760at 4548.267 kb on - strand, within BWI76_RS21760

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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4,545,017 + +1.0
4,545,025 - -0.5
4,545,049 - BWI76_RS21745 0.11 +0.8
4,545,083 - BWI76_RS21745 0.15 +2.1
4,545,176 + BWI76_RS21745 0.25 +1.6
4,545,185 + BWI76_RS21745 0.26 -1.6
4,545,194 + BWI76_RS21745 0.27 -2.5
4,545,202 - BWI76_RS21745 0.28 -0.0
4,545,299 - BWI76_RS21745 0.39 -0.1
4,545,336 + +0.5
4,545,381 + BWI76_RS21745 0.49 -0.1
4,545,418 + BWI76_RS21745 0.53 +1.0
4,545,418 + +3.4
4,545,426 - BWI76_RS21745 0.54 -2.8
4,545,427 + BWI76_RS21745 0.54 +0.0
4,545,428 + BWI76_RS21745 0.54 +1.2
4,545,515 - +0.8
4,545,646 - BWI76_RS21745 0.78 +0.9
4,545,660 + BWI76_RS21745 0.80 -2.0
4,545,668 - BWI76_RS21745 0.81 +0.2
4,545,668 - BWI76_RS21745 0.81 -0.1
4,545,673 - BWI76_RS21745 0.81 -0.0
4,545,673 - BWI76_RS21745 0.81 +0.2
4,545,702 + BWI76_RS21745 0.85 -1.1
4,545,821 + -0.9
4,545,846 + -1.2
4,545,848 + +1.0
4,545,848 + +1.5
4,546,041 - -1.0
4,546,059 - +0.6
4,546,067 - -0.5
4,546,083 + -0.3
4,546,111 + +2.0
4,546,126 + BWI76_RS21750 0.11 -0.0
4,546,137 + BWI76_RS21750 0.11 +0.2
4,546,697 + BWI76_RS21750 0.51 +0.6
4,546,736 + BWI76_RS21750 0.54 +1.9
4,546,744 - BWI76_RS21750 0.55 -0.0
4,546,781 + BWI76_RS21750 0.57 +0.6
4,546,801 - BWI76_RS21750 0.59 +0.9
4,546,913 + BWI76_RS21750 0.67 -0.9
4,547,043 + BWI76_RS21750 0.76 +0.6
4,547,050 + BWI76_RS21750 0.77 +0.3
4,547,119 - BWI76_RS21750 0.82 -3.4
4,547,248 + -0.1
4,547,256 - +1.3
4,547,434 + -1.0
4,547,451 + BWI76_RS21755 0.13 -0.8
4,547,520 + BWI76_RS21755 0.27 +1.6
4,547,570 - BWI76_RS21755 0.38 -0.2
4,547,645 - BWI76_RS21755 0.54 +0.9
4,547,747 + BWI76_RS21755 0.75 -0.2
4,547,760 - BWI76_RS21755 0.78 +0.9
4,547,926 - -1.2
4,548,139 - BWI76_RS21760 0.20 +1.2
4,548,267 - BWI76_RS21760 0.35 +3.4

Or see this region's nucleotide sequence