Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20000 and BWI76_RS20005 are separated by 96 nucleotides BWI76_RS20005 and BWI76_RS20010 are separated by 269 nucleotides BWI76_RS20010 and BWI76_RS20015 are separated by 49 nucleotides
BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362
_RS20000
BWI76_RS20005: BWI76_RS20005 - membrane protein, at 4,191,459 to 4,192,001
_RS20005
BWI76_RS20010: BWI76_RS20010 - catalase, at 4,192,271 to 4,193,719
_RS20010
BWI76_RS20015: BWI76_RS20015 - hypothetical protein, at 4,193,769 to 4,194,785
_RS20015
Position (kb) 4192
4193
4194 Strain fitness (log2 ratio) -2
-1
0
1 at 4191.665 kb on + strand, within BWI76_RS20005 at 4191.715 kb on + strand, within BWI76_RS20005 at 4191.904 kb on + strand, within BWI76_RS20005 at 4191.926 kb on + strand, within BWI76_RS20005 at 4191.957 kb on + strand at 4192.059 kb on + strand at 4192.099 kb on - strand at 4192.114 kb on - strand at 4192.291 kb on - strand at 4192.335 kb on + strand at 4192.562 kb on - strand, within BWI76_RS20010 at 4192.612 kb on + strand, within BWI76_RS20010 at 4192.612 kb on + strand, within BWI76_RS20010 at 4193.156 kb on - strand at 4193.295 kb on + strand, within BWI76_RS20010 at 4193.531 kb on - strand, within BWI76_RS20010 at 4193.655 kb on - strand at 4193.839 kb on - strand at 4194.512 kb on + strand, within BWI76_RS20015
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,191,665 + BWI76_RS20005 0.38 +0.2 4,191,715 + BWI76_RS20005 0.47 -0.8 4,191,904 + BWI76_RS20005 0.82 -1.8 4,191,926 + BWI76_RS20005 0.86 -0.6 4,191,957 + +0.9 4,192,059 + -1.2 4,192,099 - -2.4 4,192,114 - -0.8 4,192,291 - +0.1 4,192,335 + -2.7 4,192,562 - BWI76_RS20010 0.20 -2.3 4,192,612 + BWI76_RS20010 0.24 +0.4 4,192,612 + BWI76_RS20010 0.24 +1.3 4,193,156 - +1.2 4,193,295 + BWI76_RS20010 0.71 +0.2 4,193,531 - BWI76_RS20010 0.87 +0.1 4,193,655 - +1.0 4,193,839 - +0.0 4,194,512 + BWI76_RS20015 0.73 -2.1
Or see this region's nucleotide sequence