Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15210 and BWI76_RS15215 overlap by 47 nucleotides BWI76_RS15215 and BWI76_RS15220 are separated by 145 nucleotides BWI76_RS15220 and BWI76_RS15225 are separated by 12 nucleotides BWI76_RS15225 and BWI76_RS15230 are separated by 1 nucleotides
BWI76_RS15210: BWI76_RS15210 - LysR family transcriptional regulator, at 3,188,634 to 3,189,512
_RS15210
BWI76_RS15215: BWI76_RS15215 - N-acetyltransferase, at 3,189,466 to 3,189,948
_RS15215
BWI76_RS15220: BWI76_RS15220 - L-lactate dehydrogenase, at 3,190,094 to 3,191,038
_RS15220
BWI76_RS15225: BWI76_RS15225 - DeoR family transcriptional regulator, at 3,191,051 to 3,191,812
_RS15225
BWI76_RS15230: BWI76_RS15230 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,191,814 to 3,192,800
_RS15230
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3189.178 kb on + strand, within BWI76_RS15210 at 3189.322 kb on + strand, within BWI76_RS15210 at 3189.351 kb on - strand, within BWI76_RS15210 at 3189.595 kb on + strand, within BWI76_RS15215 at 3190.233 kb on + strand, within BWI76_RS15220 at 3190.611 kb on + strand, within BWI76_RS15220 at 3190.619 kb on - strand, within BWI76_RS15220 at 3191.144 kb on + strand, within BWI76_RS15225 at 3191.152 kb on - strand, within BWI76_RS15225 at 3191.276 kb on - strand, within BWI76_RS15225 at 3191.685 kb on + strand, within BWI76_RS15225 at 3191.693 kb on - strand, within BWI76_RS15225 at 3191.848 kb on - strand at 3191.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 3,189,178 + BWI76_RS15210 0.62 +0.1 3,189,322 + BWI76_RS15210 0.78 +1.1 3,189,351 - BWI76_RS15210 0.82 +3.2 3,189,595 + BWI76_RS15215 0.27 -3.5 3,190,233 + BWI76_RS15220 0.15 -0.4 3,190,611 + BWI76_RS15220 0.55 -0.3 3,190,619 - BWI76_RS15220 0.56 -0.4 3,191,144 + BWI76_RS15225 0.12 +1.4 3,191,152 - BWI76_RS15225 0.13 -0.5 3,191,276 - BWI76_RS15225 0.30 -0.5 3,191,685 + BWI76_RS15225 0.83 +1.1 3,191,693 - BWI76_RS15225 0.84 +0.6 3,191,848 - -0.2 3,191,851 - +1.6
Or see this region's nucleotide sequence