Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10480 and BWI76_RS10485 are separated by 10 nucleotides BWI76_RS10485 and BWI76_RS10490 are separated by 13 nucleotides BWI76_RS10490 and BWI76_RS10495 are separated by 125 nucleotides
BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398
_RS10480
BWI76_RS10485: BWI76_RS10485 - (hypo)xanthine hydroxylase reductase, at 2,215,409 to 2,216,377
_RS10485
BWI76_RS10490: BWI76_RS10490 - vanillate O-demethylase oxygenase subunit, at 2,216,391 to 2,217,428
_RS10490
BWI76_RS10495: BWI76_RS10495 - LysR family transcriptional regulator, at 2,217,554 to 2,218,492
_RS10495
Position (kb)
2216
2217
2218 Strain fitness (log2 ratio)
-1
0
1
2 at 2215.464 kb on - strand at 2215.566 kb on + strand, within BWI76_RS10485 at 2215.611 kb on - strand, within BWI76_RS10485 at 2216.066 kb on + strand, within BWI76_RS10485 at 2216.201 kb on + strand, within BWI76_RS10485 at 2216.552 kb on + strand, within BWI76_RS10490 at 2216.552 kb on + strand, within BWI76_RS10490 at 2216.560 kb on - strand, within BWI76_RS10490 at 2216.841 kb on - strand, within BWI76_RS10490 at 2216.881 kb on + strand, within BWI76_RS10490 at 2217.254 kb on + strand, within BWI76_RS10490 at 2217.431 kb on + strand at 2217.431 kb on - strand at 2217.915 kb on + strand, within BWI76_RS10495 at 2218.027 kb on - strand, within BWI76_RS10495 at 2218.128 kb on + strand, within BWI76_RS10495 at 2218.303 kb on + strand, within BWI76_RS10495 at 2218.308 kb on + strand, within BWI76_RS10495 at 2218.362 kb on + strand, within BWI76_RS10495 at 2218.367 kb on + strand, within BWI76_RS10495
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 2,215,464 - +0.5 2,215,566 + BWI76_RS10485 0.16 -0.0 2,215,611 - BWI76_RS10485 0.21 -0.5 2,216,066 + BWI76_RS10485 0.68 -1.3 2,216,201 + BWI76_RS10485 0.82 -0.7 2,216,552 + BWI76_RS10490 0.16 -0.3 2,216,552 + BWI76_RS10490 0.16 +0.1 2,216,560 - BWI76_RS10490 0.16 +1.3 2,216,841 - BWI76_RS10490 0.43 -1.6 2,216,881 + BWI76_RS10490 0.47 +2.1 2,217,254 + BWI76_RS10490 0.83 -0.5 2,217,431 + +1.0 2,217,431 - +0.2 2,217,915 + BWI76_RS10495 0.38 +0.1 2,218,027 - BWI76_RS10495 0.50 -0.4 2,218,128 + BWI76_RS10495 0.61 +0.0 2,218,303 + BWI76_RS10495 0.80 +0.5 2,218,308 + BWI76_RS10495 0.80 -0.6 2,218,362 + BWI76_RS10495 0.86 -0.2 2,218,367 + BWI76_RS10495 0.87 +0.2
Or see this region's nucleotide sequence