Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10490

Experiment: Gly-DL-Asp (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10480 and BWI76_RS10485 are separated by 10 nucleotidesBWI76_RS10485 and BWI76_RS10490 are separated by 13 nucleotidesBWI76_RS10490 and BWI76_RS10495 are separated by 125 nucleotides BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398 _RS10480 BWI76_RS10485: BWI76_RS10485 - (hypo)xanthine hydroxylase reductase, at 2,215,409 to 2,216,377 _RS10485 BWI76_RS10490: BWI76_RS10490 - vanillate O-demethylase oxygenase subunit, at 2,216,391 to 2,217,428 _RS10490 BWI76_RS10495: BWI76_RS10495 - LysR family transcriptional regulator, at 2,217,554 to 2,218,492 _RS10495 Position (kb) 2216 2217 2218Strain fitness (log2 ratio) -1 0 1 2at 2215.464 kb on - strandat 2215.566 kb on + strand, within BWI76_RS10485at 2215.611 kb on - strand, within BWI76_RS10485at 2216.066 kb on + strand, within BWI76_RS10485at 2216.201 kb on + strand, within BWI76_RS10485at 2216.552 kb on + strand, within BWI76_RS10490at 2216.552 kb on + strand, within BWI76_RS10490at 2216.560 kb on - strand, within BWI76_RS10490at 2216.841 kb on - strand, within BWI76_RS10490at 2216.881 kb on + strand, within BWI76_RS10490at 2217.254 kb on + strand, within BWI76_RS10490at 2217.431 kb on + strandat 2217.431 kb on - strandat 2217.915 kb on + strand, within BWI76_RS10495at 2218.027 kb on - strand, within BWI76_RS10495at 2218.128 kb on + strand, within BWI76_RS10495at 2218.303 kb on + strand, within BWI76_RS10495at 2218.308 kb on + strand, within BWI76_RS10495at 2218.362 kb on + strand, within BWI76_RS10495at 2218.367 kb on + strand, within BWI76_RS10495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
remove
2,215,464 - +0.5
2,215,566 + BWI76_RS10485 0.16 -0.0
2,215,611 - BWI76_RS10485 0.21 -0.5
2,216,066 + BWI76_RS10485 0.68 -1.3
2,216,201 + BWI76_RS10485 0.82 -0.7
2,216,552 + BWI76_RS10490 0.16 -0.3
2,216,552 + BWI76_RS10490 0.16 +0.1
2,216,560 - BWI76_RS10490 0.16 +1.3
2,216,841 - BWI76_RS10490 0.43 -1.6
2,216,881 + BWI76_RS10490 0.47 +2.1
2,217,254 + BWI76_RS10490 0.83 -0.5
2,217,431 + +1.0
2,217,431 - +0.2
2,217,915 + BWI76_RS10495 0.38 +0.1
2,218,027 - BWI76_RS10495 0.50 -0.4
2,218,128 + BWI76_RS10495 0.61 +0.0
2,218,303 + BWI76_RS10495 0.80 +0.5
2,218,308 + BWI76_RS10495 0.80 -0.6
2,218,362 + BWI76_RS10495 0.86 -0.2
2,218,367 + BWI76_RS10495 0.87 +0.2

Or see this region's nucleotide sequence