Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10025

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10020 and BWI76_RS10025 overlap by 4 nucleotidesBWI76_RS10025 and BWI76_RS10030 are separated by 235 nucleotides BWI76_RS10020: BWI76_RS10020 - ABC transporter, at 2,120,205 to 2,122,352 _RS10020 BWI76_RS10025: BWI76_RS10025 - secretion protein HlyD, at 2,122,349 to 2,123,554 _RS10025 BWI76_RS10030: BWI76_RS10030 - glycosyl transferase, at 2,123,790 to 2,126,933 _RS10030 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2121.562 kb on - strand, within BWI76_RS10020at 2121.738 kb on + strand, within BWI76_RS10020at 2121.837 kb on - strand, within BWI76_RS10020at 2121.847 kb on - strand, within BWI76_RS10020at 2121.978 kb on + strand, within BWI76_RS10020at 2121.983 kb on + strand, within BWI76_RS10020at 2122.252 kb on + strandat 2122.261 kb on + strandat 2122.269 kb on - strandat 2122.590 kb on + strand, within BWI76_RS10025at 2122.624 kb on - strand, within BWI76_RS10025at 2122.624 kb on - strand, within BWI76_RS10025at 2122.888 kb on - strand, within BWI76_RS10025at 2122.926 kb on + strand, within BWI76_RS10025at 2122.934 kb on - strand, within BWI76_RS10025at 2122.941 kb on + strand, within BWI76_RS10025at 2122.949 kb on - strand, within BWI76_RS10025at 2123.018 kb on - strand, within BWI76_RS10025at 2123.023 kb on + strand, within BWI76_RS10025at 2123.046 kb on - strand, within BWI76_RS10025at 2123.052 kb on - strand, within BWI76_RS10025at 2123.057 kb on - strand, within BWI76_RS10025at 2123.065 kb on - strand, within BWI76_RS10025at 2123.090 kb on + strand, within BWI76_RS10025at 2123.090 kb on + strand, within BWI76_RS10025at 2123.090 kb on + strand, within BWI76_RS10025at 2123.097 kb on - strand, within BWI76_RS10025at 2123.111 kb on + strand, within BWI76_RS10025at 2123.111 kb on + strand, within BWI76_RS10025at 2123.111 kb on + strand, within BWI76_RS10025at 2123.119 kb on - strand, within BWI76_RS10025at 2123.119 kb on - strand, within BWI76_RS10025at 2123.119 kb on - strand, within BWI76_RS10025at 2123.137 kb on + strand, within BWI76_RS10025at 2123.154 kb on + strand, within BWI76_RS10025at 2123.164 kb on + strand, within BWI76_RS10025at 2123.169 kb on + strand, within BWI76_RS10025at 2123.169 kb on + strand, within BWI76_RS10025at 2123.169 kb on + strand, within BWI76_RS10025at 2123.169 kb on + strand, within BWI76_RS10025at 2123.169 kb on + strand, within BWI76_RS10025at 2123.177 kb on - strand, within BWI76_RS10025at 2123.177 kb on - strand, within BWI76_RS10025at 2123.177 kb on - strand, within BWI76_RS10025at 2123.214 kb on - strand, within BWI76_RS10025at 2123.256 kb on - strand, within BWI76_RS10025at 2123.324 kb on + strand, within BWI76_RS10025at 2123.339 kb on - strand, within BWI76_RS10025at 2123.348 kb on + strand, within BWI76_RS10025at 2123.348 kb on + strand, within BWI76_RS10025at 2123.348 kb on + strand, within BWI76_RS10025at 2123.356 kb on - strand, within BWI76_RS10025at 2123.356 kb on - strand, within BWI76_RS10025at 2123.356 kb on - strand, within BWI76_RS10025at 2123.392 kb on + strand, within BWI76_RS10025at 2123.410 kb on - strand, within BWI76_RS10025at 2123.456 kb on - strandat 2123.473 kb on + strandat 2123.527 kb on + strandat 2123.535 kb on - strandat 2123.565 kb on + strandat 2123.570 kb on + strandat 2123.570 kb on + strandat 2123.573 kb on - strandat 2123.578 kb on - strandat 2123.578 kb on - strandat 2123.610 kb on + strandat 2123.610 kb on + strandat 2123.610 kb on + strandat 2123.610 kb on + strandat 2123.613 kb on - strandat 2123.615 kb on + strandat 2123.615 kb on + strandat 2123.618 kb on - strandat 2123.623 kb on - strandat 2123.623 kb on - strandat 2123.665 kb on - strandat 2123.681 kb on - strandat 2123.684 kb on + strandat 2123.692 kb on - strandat 2123.694 kb on - strandat 2123.696 kb on + strandat 2123.704 kb on - strandat 2123.763 kb on - strandat 2123.789 kb on - strandat 2123.791 kb on - strandat 2123.803 kb on + strandat 2123.863 kb on - strandat 2123.864 kb on - strandat 2123.864 kb on - strandat 2123.880 kb on + strandat 2123.966 kb on + strandat 2124.176 kb on + strand, within BWI76_RS10030at 2124.184 kb on - strand, within BWI76_RS10030at 2124.367 kb on - strand, within BWI76_RS10030at 2124.537 kb on - strand, within BWI76_RS10030

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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2,121,562 - BWI76_RS10020 0.63 -2.9
2,121,738 + BWI76_RS10020 0.71 -3.0
2,121,837 - BWI76_RS10020 0.76 -1.9
2,121,847 - BWI76_RS10020 0.76 +0.4
2,121,978 + BWI76_RS10020 0.83 +0.4
2,121,983 + BWI76_RS10020 0.83 -0.7
2,122,252 + -1.4
2,122,261 + -0.4
2,122,269 - -1.5
2,122,590 + BWI76_RS10025 0.20 +0.5
2,122,624 - BWI76_RS10025 0.23 -3.3
2,122,624 - BWI76_RS10025 0.23 -0.9
2,122,888 - BWI76_RS10025 0.45 -0.4
2,122,926 + BWI76_RS10025 0.48 -1.0
2,122,934 - BWI76_RS10025 0.49 +2.1
2,122,941 + BWI76_RS10025 0.49 +0.1
2,122,949 - BWI76_RS10025 0.50 -0.2
2,123,018 - BWI76_RS10025 0.55 -0.4
2,123,023 + BWI76_RS10025 0.56 -0.4
2,123,046 - BWI76_RS10025 0.58 -1.5
2,123,052 - BWI76_RS10025 0.58 +1.8
2,123,057 - BWI76_RS10025 0.59 +1.7
2,123,065 - BWI76_RS10025 0.59 -0.9
2,123,090 + BWI76_RS10025 0.61 +1.4
2,123,090 + BWI76_RS10025 0.61 +1.0
2,123,090 + BWI76_RS10025 0.61 -0.0
2,123,097 - BWI76_RS10025 0.62 -0.7
2,123,111 + BWI76_RS10025 0.63 -0.3
2,123,111 + BWI76_RS10025 0.63 -0.7
2,123,111 + BWI76_RS10025 0.63 -0.2
2,123,119 - BWI76_RS10025 0.64 +0.8
2,123,119 - BWI76_RS10025 0.64 -1.0
2,123,119 - BWI76_RS10025 0.64 +2.6
2,123,137 + BWI76_RS10025 0.65 -0.7
2,123,154 + BWI76_RS10025 0.67 +0.6
2,123,164 + BWI76_RS10025 0.68 +0.5
2,123,169 + BWI76_RS10025 0.68 +1.6
2,123,169 + BWI76_RS10025 0.68 +0.6
2,123,169 + BWI76_RS10025 0.68 +0.5
2,123,169 + BWI76_RS10025 0.68 -0.7
2,123,169 + BWI76_RS10025 0.68 -0.3
2,123,177 - BWI76_RS10025 0.69 +0.2
2,123,177 - BWI76_RS10025 0.69 -0.1
2,123,177 - BWI76_RS10025 0.69 -0.2
2,123,214 - BWI76_RS10025 0.72 -1.5
2,123,256 - BWI76_RS10025 0.75 +0.6
2,123,324 + BWI76_RS10025 0.81 -1.2
2,123,339 - BWI76_RS10025 0.82 -1.7
2,123,348 + BWI76_RS10025 0.83 -1.8
2,123,348 + BWI76_RS10025 0.83 +0.1
2,123,348 + BWI76_RS10025 0.83 -0.6
2,123,356 - BWI76_RS10025 0.83 +0.2
2,123,356 - BWI76_RS10025 0.83 -2.9
2,123,356 - BWI76_RS10025 0.83 -0.7
2,123,392 + BWI76_RS10025 0.86 +0.5
2,123,410 - BWI76_RS10025 0.88 -2.3
2,123,456 - +1.2
2,123,473 + -0.0
2,123,527 + +0.8
2,123,535 - +1.2
2,123,565 + +0.5
2,123,570 + -0.7
2,123,570 + +0.4
2,123,573 - +0.6
2,123,578 - +0.8
2,123,578 - -2.7
2,123,610 + +0.4
2,123,610 + +0.3
2,123,610 + +1.2
2,123,610 + -1.4
2,123,613 - +0.2
2,123,615 + +1.6
2,123,615 + -0.1
2,123,618 - -0.1
2,123,623 - +0.1
2,123,623 - -1.8
2,123,665 - -0.4
2,123,681 - +0.6
2,123,684 + +0.8
2,123,692 - +0.0
2,123,694 - -0.7
2,123,696 + +0.4
2,123,704 - +0.4
2,123,763 - -0.9
2,123,789 - +2.8
2,123,791 - +0.3
2,123,803 + -2.3
2,123,863 - +0.6
2,123,864 - +2.8
2,123,864 - +0.0
2,123,880 + -2.5
2,123,966 + -0.2
2,124,176 + BWI76_RS10030 0.12 +2.0
2,124,184 - BWI76_RS10030 0.13 +1.2
2,124,367 - BWI76_RS10030 0.18 +1.2
2,124,537 - BWI76_RS10030 0.24 -0.2

Or see this region's nucleotide sequence