Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04310 and BWI76_RS04315 are separated by 505 nucleotides BWI76_RS04315 and BWI76_RS04320 are separated by 53 nucleotides
BWI76_RS04310: BWI76_RS04310 - hypothetical protein, at 888,547 to 888,726
_RS04310
BWI76_RS04315: BWI76_RS04315 - Na+/H+ antiporter NhaA, at 889,232 to 890,407
_RS04315
BWI76_RS04320: BWI76_RS04320 - transcriptional activator NhaR, at 890,461 to 891,360
_RS04320
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 888.375 kb on + strand at 888.395 kb on + strand at 888.395 kb on + strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.403 kb on - strand at 888.438 kb on - strand at 888.438 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.547 kb on - strand at 888.574 kb on - strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.642 kb on + strand, within BWI76_RS04310 at 888.645 kb on - strand, within BWI76_RS04310 at 888.647 kb on + strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.650 kb on - strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.689 kb on + strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.707 kb on - strand, within BWI76_RS04310 at 888.734 kb on + strand at 888.757 kb on - strand at 888.792 kb on + strand at 888.810 kb on + strand at 888.811 kb on - strand at 888.818 kb on - strand at 888.841 kb on + strand at 888.841 kb on + strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.849 kb on - strand at 888.854 kb on - strand at 888.854 kb on - strand at 888.856 kb on - strand at 888.950 kb on + strand at 888.950 kb on + strand at 889.089 kb on + strand at 889.303 kb on + strand at 889.315 kb on + strand at 889.330 kb on + strand at 889.370 kb on - strand, within BWI76_RS04315 at 889.466 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.508 kb on - strand, within BWI76_RS04315 at 889.603 kb on + strand, within BWI76_RS04315 at 889.655 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.750 kb on + strand, within BWI76_RS04315 at 889.758 kb on - strand, within BWI76_RS04315 at 889.813 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.851 kb on + strand, within BWI76_RS04315 at 889.866 kb on + strand, within BWI76_RS04315 at 889.874 kb on - strand, within BWI76_RS04315 at 890.085 kb on + strand, within BWI76_RS04315 at 890.139 kb on - strand, within BWI76_RS04315 at 890.189 kb on + strand, within BWI76_RS04315 at 890.220 kb on - strand, within BWI76_RS04315 at 890.286 kb on + strand, within BWI76_RS04315 at 890.292 kb on + strand at 890.395 kb on - strand at 890.467 kb on - strand at 890.544 kb on + strand at 890.624 kb on + strand, within BWI76_RS04320 at 890.880 kb on + strand, within BWI76_RS04320 at 890.914 kb on + strand, within BWI76_RS04320 at 891.025 kb on - strand, within BWI76_RS04320 at 891.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 888,375 + +0.8 888,395 + +2.8 888,395 + +0.5 888,403 - -0.4 888,403 - +0.5 888,403 - +2.5 888,403 - -0.9 888,403 - -0.9 888,403 - -2.0 888,438 - +1.8 888,438 - -0.0 888,547 - +1.7 888,547 - +1.5 888,547 - -1.0 888,574 - BWI76_RS04310 0.15 -0.7 888,642 + BWI76_RS04310 0.53 -0.1 888,642 + BWI76_RS04310 0.53 -2.2 888,642 + BWI76_RS04310 0.53 +0.3 888,642 + BWI76_RS04310 0.53 +1.0 888,642 + BWI76_RS04310 0.53 -1.2 888,645 - BWI76_RS04310 0.54 +0.4 888,647 + BWI76_RS04310 0.56 +1.4 888,650 - BWI76_RS04310 0.57 -1.1 888,650 - BWI76_RS04310 0.57 +1.8 888,650 - BWI76_RS04310 0.57 +0.4 888,650 - BWI76_RS04310 0.57 +0.1 888,650 - BWI76_RS04310 0.57 +0.5 888,689 + BWI76_RS04310 0.79 +0.9 888,689 + BWI76_RS04310 0.79 +0.3 888,707 - BWI76_RS04310 0.89 +0.3 888,707 - BWI76_RS04310 0.89 +1.2 888,734 + +0.1 888,757 - +1.3 888,792 + +0.8 888,810 + -3.2 888,811 - -1.1 888,818 - +0.2 888,841 + +1.0 888,841 + +1.1 888,849 - -0.4 888,849 - -1.6 888,849 - -1.0 888,854 - -0.2 888,854 - +0.8 888,856 - -0.3 888,950 + +0.6 888,950 + -0.2 889,089 + +1.4 889,303 + -0.6 889,315 + +0.1 889,330 + +0.3 889,370 - BWI76_RS04315 0.12 +1.0 889,466 - BWI76_RS04315 0.20 -0.7 889,508 - BWI76_RS04315 0.23 -0.2 889,508 - BWI76_RS04315 0.23 -0.3 889,603 + BWI76_RS04315 0.32 -1.2 889,655 + BWI76_RS04315 0.36 +0.3 889,750 + BWI76_RS04315 0.44 +0.2 889,750 + BWI76_RS04315 0.44 +0.1 889,750 + BWI76_RS04315 0.44 -1.1 889,750 + BWI76_RS04315 0.44 +0.5 889,758 - BWI76_RS04315 0.45 -2.1 889,813 + BWI76_RS04315 0.49 -1.3 889,851 + BWI76_RS04315 0.53 +0.2 889,851 + BWI76_RS04315 0.53 -0.4 889,866 + BWI76_RS04315 0.54 +1.0 889,874 - BWI76_RS04315 0.55 +1.5 890,085 + BWI76_RS04315 0.73 +0.9 890,139 - BWI76_RS04315 0.77 -2.0 890,189 + BWI76_RS04315 0.81 -3.2 890,220 - BWI76_RS04315 0.84 +0.6 890,286 + BWI76_RS04315 0.90 -0.2 890,292 + -2.1 890,395 - +0.7 890,467 - -0.7 890,544 + -0.7 890,624 + BWI76_RS04320 0.18 -2.0 890,880 + BWI76_RS04320 0.47 +1.2 890,914 + BWI76_RS04320 0.50 -0.4 891,025 - BWI76_RS04320 0.63 +0.1 891,371 + -1.9
Or see this region's nucleotide sequence