Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05600

Experiment: formate McAA pantothenate dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA pantothenate dropout
1,073,137	-		MMP_RS05590	0.71	+0.8
1,073,138	+		MMP_RS05590	0.72	-0.3
1,073,138	+		MMP_RS05590	0.72	-0.3
1,073,159	+		MMP_RS05590	0.73	-0.4
1,073,188	+		MMP_RS05590	0.76	-0.3
1,073,208	-		MMP_RS05590	0.78	-0.4
1,073,217	+		MMP_RS05590	0.79	-0.2
1,073,270	-		MMP_RS05590	0.83	+0.1
1,073,298	+		MMP_RS05590	0.86	+0.0
1,073,301	-		MMP_RS05590	0.86	+0.2
1,073,367	-				+0.4
1,073,378	+				+0.0
1,073,378	+				+0.0
1,073,378	+				-0.5
1,073,378	+				+0.2
1,073,442	+				+0.5
1,073,449	-				-0.1
1,073,450	+				+0.7
1,073,452	-				+0.5
1,073,452	-				+0.4
1,073,452	-				+0.5
1,073,453	+				+0.5
1,073,459	-				+0.5
1,073,465	-				-0.2
1,073,465	-				+0.7
1,073,466	+				-0.2
1,073,466	+				+0.2
1,073,466	+				-0.9
1,073,535	-		MMP_RS05595	0.13	+0.5
1,073,621	-		MMP_RS05595	0.27	-0.2
1,073,639	-		MMP_RS05595	0.30	+0.1
1,073,640	+		MMP_RS05595	0.30	+0.4
1,073,643	-		MMP_RS05595	0.31	+0.1
1,073,708	-		MMP_RS05595	0.42	-0.1
1,073,892	-		MMP_RS05595	0.72	+0.2
1,073,893	+		MMP_RS05595	0.72	-0.1
1,073,893	+		MMP_RS05595	0.72	+0.4
1,073,896	-		MMP_RS05595	0.72	-0.0
1,073,896	-		MMP_RS05595	0.72	-0.0
1,073,899	-		MMP_RS05595	0.73	+0.2
1,073,899	-		MMP_RS05595	0.73	+0.4
1,073,899	-		MMP_RS05595	0.73	+0.6
1,073,900	+		MMP_RS05595	0.73	-0.2
1,073,900	+		MMP_RS05595	0.73	+0.1
1,073,903	-		MMP_RS05595	0.74	-0.6
1,073,904	+		MMP_RS05595	0.74	+0.0
1,073,904	+		MMP_RS05595	0.74	-0.0
1,073,916	-		MMP_RS05595	0.76	-1.0
1,073,917	+		MMP_RS05595	0.76	-0.2
1,073,926	+		MMP_RS05595	0.77	+0.6
1,073,928	+		MMP_RS05595	0.78	+0.8
1,073,931	+		MMP_RS05595	0.78	-1.3
1,073,931	+		MMP_RS05595	0.78	+0.4
1,073,945	+		MMP_RS05595	0.80	+0.7
1,073,959	+		MMP_RS05595	0.83	-0.1
1,074,061	-				+0.1
1,074,061	-				+0.2
1,074,061	-				+0.3
1,074,062	+				+0.6
1,074,068	+				+0.2
1,074,072	-				-0.6
1,074,075	-				+0.5
1,074,076	+				+0.4
1,074,109	-				+0.2
1,074,109	-				+0.3
1,074,109	-				+0.4
1,074,110	+				-0.3
1,074,110	+				-0.1
1,074,110	+				-0.2
1,074,116	+				+0.6
1,074,116	+				+0.6
1,074,116	+				-0.8
1,074,117	-				-0.9
1,074,123	-				+1.2
1,074,124	+				-0.3
1,074,124	+				+0.4
1,074,128	-				+0.1
1,074,131	-				-0.3
1,074,141	+				-0.1
1,074,161	-				+0.2
1,074,161	-				-0.9
1,074,175	+				-0.0
1,074,193	-		MMP_RS05600	0.11	+0.2
1,074,193	-		MMP_RS05600	0.11	+0.6
1,074,194	+		MMP_RS05600	0.11	+0.4
1,074,194	+		MMP_RS05600	0.11	+0.6
1,074,194	+		MMP_RS05600	0.11	+0.1
1,074,194	+		MMP_RS05600	0.11	+0.5
1,074,194	+		MMP_RS05600	0.11	-0.3
1,074,194	+		MMP_RS05600	0.11	-0.6
1,074,197	-		MMP_RS05600	0.12	+0.3
1,074,197	-		MMP_RS05600	0.12	-0.2
1,074,198	+		MMP_RS05600	0.12	-0.3
1,074,258	-		MMP_RS05600	0.20	+0.2
1,074,267	-		MMP_RS05600	0.21	-0.5
1,074,268	+		MMP_RS05600	0.21	+0.4
1,074,365	-		MMP_RS05600	0.34	+0.5
1,074,464	-		MMP_RS05600	0.48	+0.6
1,074,464	-		MMP_RS05600	0.48	+0.5
1,074,464	-		MMP_RS05600	0.48	+0.1
1,074,464	-		MMP_RS05600	0.48	+0.3
1,074,465	+		MMP_RS05600	0.48	+0.1
1,074,465	+		MMP_RS05600	0.48	+0.7
1,074,466	-		MMP_RS05600	0.48	+0.1
1,074,466	-		MMP_RS05600	0.48	+0.6
1,074,466	-		MMP_RS05600	0.48	-0.0
1,074,466	-		MMP_RS05600	0.48	+0.1
1,074,466	-		MMP_RS05600	0.48	+0.2
1,074,467	+		MMP_RS05600	0.48	-0.3
1,074,467	+		MMP_RS05600	0.48	+0.2
1,074,467	+		MMP_RS05600	0.48	+0.2
1,074,467	+		MMP_RS05600	0.48	+0.0
1,074,467	+		MMP_RS05600	0.48	+0.3
1,074,488	-		MMP_RS05600	0.51	+0.4
1,074,489	+		MMP_RS05600	0.51	+0.2
1,074,492	-		MMP_RS05600	0.52	+0.4
1,074,492	-		MMP_RS05600	0.52	+0.5
1,074,493	+		MMP_RS05600	0.52	+0.7
1,074,524	+		MMP_RS05600	0.56	+0.1
1,074,526	-		MMP_RS05600	0.56	+0.9
1,074,526	-		MMP_RS05600	0.56	-0.2
1,074,532	-		MMP_RS05600	0.57	+0.2
1,074,532	-		MMP_RS05600	0.57	+1.4
1,074,532	-		MMP_RS05600	0.57	+0.4
1,074,532	-		MMP_RS05600	0.57	+0.2
1,074,532	-		MMP_RS05600	0.57	+0.7
1,074,558	-		MMP_RS05600	0.61	-0.3
1,074,558	-		MMP_RS05600	0.61	+0.2
1,074,559	+		MMP_RS05600	0.61	+0.1
1,074,562	-		MMP_RS05600	0.61	+0.7
1,074,562	-		MMP_RS05600	0.61	+0.3
1,074,563	+		MMP_RS05600	0.61	+0.8
1,074,564	-		MMP_RS05600	0.61	+0.7
1,074,565	+		MMP_RS05600	0.62	+0.2
1,074,629	-		MMP_RS05600	0.70	-1.3
1,074,634	+		MMP_RS05600	0.71	+0.5
1,074,634	+		MMP_RS05600	0.71	+0.3
1,074,657	-		MMP_RS05600	0.74	+0.3
1,074,658	+		MMP_RS05600	0.74	+0.1
1,074,669	+		MMP_RS05600	0.76	+0.1
1,074,672	+		MMP_RS05600	0.76	+0.2
1,074,693	-		MMP_RS05600	0.79	-0.1
1,074,784	+				+0.4
1,074,794	-				+1.2
1,074,797	+				-0.0
1,074,797	+				+0.8
1,074,845	+				+0.5
1,074,868	-				-0.1
1,074,870	-				+0.0
1,074,870	-				-0.2
1,074,870	-				-0.0
1,074,871	+				-0.4
1,074,871	+				+0.4
1,074,874	-				+0.0
1,074,874	-				+0.2
1,074,875	+				-0.2
1,074,879	-				+0.2
1,074,879	-				-0.0
1,074,898	-				+0.1
1,074,906	+				-0.1
1,074,949	+				-0.1
1,074,960	+				+0.4
1,074,964	+				+0.0
1,074,970	-				-0.0
1,074,970	-				+0.6
1,074,970	-				-0.0
1,074,970	-				-0.1
1,074,970	-				+0.6
1,074,971	+				+0.6
1,074,972	-				+0.3
1,074,992	-				-1.0
1,074,992	-				-0.1
1,074,993	+				+0.1
1,075,073	-				-1.3
1,075,077	-				+0.2
1,075,085	-				+0.2
1,075,088	-				-0.3
1,075,152	-		MMP_RS05605	0.11	+0.4
1,075,164	+		MMP_RS05605	0.11	-0.3
1,075,164	+		MMP_RS05605	0.11	-0.1
1,075,166	-		MMP_RS05605	0.12	+0.2
1,075,198	+		MMP_RS05605	0.13	+0.5
1,075,199	-		MMP_RS05605	0.13	+0.0
1,075,199	-		MMP_RS05605	0.13	-0.2
1,075,225	+		MMP_RS05605	0.15	-0.3
1,075,238	-		MMP_RS05605	0.16	+0.3
1,075,239	+		MMP_RS05605	0.16	+0.1
1,075,348	-		MMP_RS05605	0.22	+1.0
1,075,400	-		MMP_RS05605	0.25	-0.0
1,075,428	-		MMP_RS05605	0.26	+0.1
1,075,430	-		MMP_RS05605	0.26	-0.3
1,075,430	-		MMP_RS05605	0.26	+0.0
1,075,430	-		MMP_RS05605	0.26	+0.2
1,075,431	+		MMP_RS05605	0.26	-0.2
1,075,431	+		MMP_RS05605	0.26	-0.0
1,075,431	+		MMP_RS05605	0.26	+0.5
1,075,432	-		MMP_RS05605	0.26	+0.2
1,075,432	-		MMP_RS05605	0.26	-0.7
1,075,442	-		MMP_RS05605	0.27	+0.3
1,075,457	+		MMP_RS05605	0.28	+0.5
1,075,457	+		MMP_RS05605	0.28	+0.2
1,075,473	-		MMP_RS05605	0.29	-0.7
1,075,474	+		MMP_RS05605	0.29	+0.4
1,075,581	-		MMP_RS05605	0.35	+0.6
1,075,613	+		MMP_RS05605	0.37	+0.6
1,075,634	+		MMP_RS05605	0.38	-0.0
1,075,645	-		MMP_RS05605	0.38	-0.4
1,075,645	-		MMP_RS05605	0.38	+0.7
1,075,646	+		MMP_RS05605	0.38	-1.5
1,075,646	+		MMP_RS05605	0.38	-0.8
1,075,718	-		MMP_RS05605	0.42	+0.8
1,075,719	+		MMP_RS05605	0.42	-0.1
1,075,719	+		MMP_RS05605	0.42	-1.2
1,075,721	+		MMP_RS05605	0.43	-0.0
1,075,807	+		MMP_RS05605	0.47	-0.5
1,075,807	+		MMP_RS05605	0.47	-0.3
1,075,809	+		MMP_RS05605	0.47	+0.3
1,075,812	+		MMP_RS05605	0.48	-0.8