Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06083

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06082 and H281DRAFT_06083 are separated by 174 nucleotidesH281DRAFT_06083 and H281DRAFT_06084 are separated by 143 nucleotides H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311 _06082 H281DRAFT_06083: H281DRAFT_06083 - heat shock protein Hsp20, at 101,486 to 102,121 _06083 H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840 _06084 Position (kb) 101 102 103Strain fitness (log2 ratio) -1 0 1at 100.624 kb on + strand, within H281DRAFT_06082at 100.641 kb on + strand, within H281DRAFT_06082at 100.938 kb on + strand, within H281DRAFT_06082at 101.042 kb on - strandat 101.080 kb on + strandat 101.215 kb on - strandat 101.649 kb on + strand, within H281DRAFT_06083at 101.876 kb on + strand, within H281DRAFT_06083at 102.275 kb on - strandat 102.275 kb on - strandat 102.521 kb on - strand, within H281DRAFT_06084at 102.570 kb on + strand, within H281DRAFT_06084at 102.570 kb on + strand, within H281DRAFT_06084at 102.571 kb on - strand, within H281DRAFT_06084at 102.574 kb on - strand, within H281DRAFT_06084at 102.737 kb on - strand, within H281DRAFT_06084at 102.830 kb on - strandat 103.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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100,624 + H281DRAFT_06082 0.76 +0.6
100,641 + H281DRAFT_06082 0.76 -0.1
100,938 + H281DRAFT_06082 0.87 -0.8
101,042 - +0.5
101,080 + -0.9
101,215 - -0.7
101,649 + H281DRAFT_06083 0.26 -0.8
101,876 + H281DRAFT_06083 0.61 -0.4
102,275 - +0.3
102,275 - +0.3
102,521 - H281DRAFT_06084 0.44 -0.5
102,570 + H281DRAFT_06084 0.53 -0.2
102,570 + H281DRAFT_06084 0.53 -0.0
102,571 - H281DRAFT_06084 0.53 -0.2
102,574 - H281DRAFT_06084 0.54 +0.5
102,737 - H281DRAFT_06084 0.82 -0.2
102,830 - -1.0
103,045 - +0.3

Or see this region's nucleotide sequence