Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03907

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03906 and H281DRAFT_03907 are separated by 241 nucleotidesH281DRAFT_03907 and H281DRAFT_03908 overlap by 35 nucleotidesH281DRAFT_03908 and H281DRAFT_03909 are separated by 55 nucleotides H281DRAFT_03906: H281DRAFT_03906 - D-methionine transport system ATP-binding protein, at 2,346 to 3,380 _03906 H281DRAFT_03907: H281DRAFT_03907 - Lysophospholipase, alpha-beta hydrolase superfamily, at 3,622 to 4,575 _03907 H281DRAFT_03908: H281DRAFT_03908 - Enoyl-CoA hydratase/carnithine racemase, at 4,541 to 5,341 _03908 H281DRAFT_03909: H281DRAFT_03909 - Acetoin utilization deacetylase AcuC, at 5,397 to 6,371 _03909 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1at 3.082 kb on + strand, within H281DRAFT_03906at 3.082 kb on + strand, within H281DRAFT_03906at 3.369 kb on + strandat 3.369 kb on + strandat 3.370 kb on - strandat 3.450 kb on + strandat 3.475 kb on - strandat 3.479 kb on + strandat 3.479 kb on + strandat 3.527 kb on - strandat 3.731 kb on - strand, within H281DRAFT_03907at 3.746 kb on + strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.941 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strandat 3.996 kb on + strand, within H281DRAFT_03907at 4.024 kb on + strand, within H281DRAFT_03907at 4.025 kb on - strand, within H281DRAFT_03907at 4.444 kb on + strand, within H281DRAFT_03907at 4.444 kb on + strand, within H281DRAFT_03907at 4.445 kb on - strand, within H281DRAFT_03907at 4.726 kb on + strand, within H281DRAFT_03908at 4.727 kb on - strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.967 kb on - strand, within H281DRAFT_03908at 5.082 kb on + strand, within H281DRAFT_03908at 5.085 kb on + strand, within H281DRAFT_03908at 5.289 kb on + strandat 5.378 kb on + strandat 5.458 kb on + strandat 5.459 kb on - strandat 5.515 kb on - strand, within H281DRAFT_03909at 5.540 kb on - strand, within H281DRAFT_03909at 5.540 kb on - strand, within H281DRAFT_03909

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,082 + H281DRAFT_03906 0.71 -0.1
3,082 + H281DRAFT_03906 0.71 +0.2
3,369 + +0.2
3,369 + +0.2
3,370 - +1.1
3,450 + +0.2
3,475 - -0.7
3,479 + -0.2
3,479 + -0.2
3,527 - -0.1
3,731 - H281DRAFT_03907 0.11 +0.0
3,746 + H281DRAFT_03907 0.13 -0.3
3,747 - H281DRAFT_03907 0.13 -0.1
3,747 - H281DRAFT_03907 0.13 -0.1
3,747 - H281DRAFT_03907 0.13 +0.5
3,747 - H281DRAFT_03907 0.13 -0.1
3,747 - H281DRAFT_03907 0.13 +0.6
3,898 + H281DRAFT_03907 0.29 -0.1
3,898 + H281DRAFT_03907 0.29 -0.2
3,898 + H281DRAFT_03907 0.29 -0.1
3,898 + H281DRAFT_03907 0.29 -0.4
3,898 + H281DRAFT_03907 0.29 +0.1
3,899 - H281DRAFT_03907 0.29 -0.4
3,899 - H281DRAFT_03907 0.29 -0.0
3,919 + H281DRAFT_03907 0.31 +0.1
3,919 + H281DRAFT_03907 0.31 +0.1
3,941 + H281DRAFT_03907 0.33 -0.7
3,996 + H281DRAFT_03907 0.39 +0.1
3,996 + -0.7
3,996 + H281DRAFT_03907 0.39 +0.1
4,024 + H281DRAFT_03907 0.42 -0.5
4,025 - H281DRAFT_03907 0.42 -0.1
4,444 + H281DRAFT_03907 0.86 +0.6
4,444 + H281DRAFT_03907 0.86 +0.5
4,445 - H281DRAFT_03907 0.86 +0.6
4,726 + H281DRAFT_03908 0.23 +0.2
4,727 - H281DRAFT_03908 0.23 +0.6
4,966 + H281DRAFT_03908 0.53 -0.1
4,966 + H281DRAFT_03908 0.53 -0.3
4,966 + H281DRAFT_03908 0.53 +0.1
4,967 - H281DRAFT_03908 0.53 +0.1
5,082 + H281DRAFT_03908 0.68 +0.1
5,085 + H281DRAFT_03908 0.68 -0.7
5,289 + -0.4
5,378 + +0.3
5,458 + -0.3
5,459 - -1.6
5,515 - H281DRAFT_03909 0.12 -0.5
5,540 - H281DRAFT_03909 0.15 -1.5
5,540 - H281DRAFT_03909 0.15 -1.5

Or see this region's nucleotide sequence