Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00174

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00173 and H281DRAFT_00174 are separated by 83 nucleotidesH281DRAFT_00174 and H281DRAFT_00175 are separated by 139 nucleotides H281DRAFT_00173: H281DRAFT_00173 - thioredoxin reductase (NADPH), at 186,040 to 187,041 _00173 H281DRAFT_00174: H281DRAFT_00174 - hypothetical protein, at 187,125 to 187,256 _00174 H281DRAFT_00175: H281DRAFT_00175 - DNA translocase FtsK, at 187,396 to 189,711 _00175 Position (kb) 187 188Strain fitness (log2 ratio) -1 0 1at 187.105 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.128 kb on + strandat 187.128 kb on + strandat 187.129 kb on - strandat 187.129 kb on - strandat 187.248 kb on + strandat 187.258 kb on + strandat 187.259 kb on - strandat 187.284 kb on + strandat 187.412 kb on - strandat 187.523 kb on - strandat 187.672 kb on - strand, within H281DRAFT_00175at 187.948 kb on + strand, within H281DRAFT_00175

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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187,105 - -0.1
187,127 - -0.2
187,127 - -0.5
187,128 + -0.0
187,128 + -0.3
187,129 - -0.4
187,129 - +0.2
187,248 + -0.2
187,258 + +1.5
187,259 - -0.6
187,284 + +0.2
187,412 - -1.2
187,523 - +0.4
187,672 - H281DRAFT_00175 0.12 -0.5
187,948 + H281DRAFT_00175 0.24 -0.2

Or see this region's nucleotide sequence