Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09420 and PGA1_c09430 are separated by 0 nucleotides PGA1_c09430 and PGA1_c09440 are separated by 584 nucleotides
PGA1_c09420: PGA1_c09420 - pyruvate carboxylase Pyc, at 959,426 to 962,992
_c09420
PGA1_c09430: PGA1_c09430 - l-lactate dehydrogenase IldD, at 962,993 to 964,198
_c09430
PGA1_c09440: PGA1_c09440 - diguanylate cyclase (GGDEF) domain-containing protein, at 964,783 to 966,579
_c09440
Position (kb) 962
963
964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 962.115 kb on + strand, within PGA1_c09420 at 962.115 kb on - strand, within PGA1_c09420 at 962.127 kb on - strand, within PGA1_c09420 at 962.144 kb on - strand, within PGA1_c09420 at 962.167 kb on - strand, within PGA1_c09420 at 962.167 kb on - strand, within PGA1_c09420 at 962.172 kb on - strand, within PGA1_c09420 at 962.174 kb on - strand, within PGA1_c09420 at 962.182 kb on - strand, within PGA1_c09420 at 962.267 kb on + strand, within PGA1_c09420 at 962.267 kb on + strand, within PGA1_c09420 at 962.367 kb on + strand, within PGA1_c09420 at 962.444 kb on + strand, within PGA1_c09420 at 962.540 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.616 kb on - strand, within PGA1_c09420 at 962.629 kb on + strand, within PGA1_c09420 at 962.693 kb on + strand at 962.743 kb on + strand at 962.743 kb on + strand at 962.780 kb on + strand at 962.872 kb on + strand at 962.945 kb on - strand at 962.956 kb on + strand at 963.057 kb on + strand at 963.074 kb on - strand at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.202 kb on + strand, within PGA1_c09430 at 963.210 kb on - strand, within PGA1_c09430 at 963.223 kb on + strand, within PGA1_c09430 at 963.326 kb on - strand, within PGA1_c09430 at 963.341 kb on - strand, within PGA1_c09430 at 963.381 kb on - strand, within PGA1_c09430 at 963.416 kb on + strand, within PGA1_c09430 at 963.458 kb on + strand, within PGA1_c09430 at 963.477 kb on - strand, within PGA1_c09430 at 963.481 kb on + strand, within PGA1_c09430 at 963.486 kb on - strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.527 kb on + strand, within PGA1_c09430 at 963.535 kb on - strand, within PGA1_c09430 at 963.569 kb on - strand, within PGA1_c09430 at 963.585 kb on - strand, within PGA1_c09430 at 963.595 kb on + strand, within PGA1_c09430 at 963.605 kb on + strand, within PGA1_c09430 at 963.608 kb on - strand, within PGA1_c09430 at 963.674 kb on + strand, within PGA1_c09430 at 963.706 kb on + strand, within PGA1_c09430 at 963.714 kb on - strand, within PGA1_c09430 at 963.872 kb on + strand, within PGA1_c09430 at 963.875 kb on - strand, within PGA1_c09430 at 963.886 kb on + strand, within PGA1_c09430 at 963.894 kb on - strand, within PGA1_c09430 at 963.915 kb on - strand, within PGA1_c09430 at 963.963 kb on - strand, within PGA1_c09430 at 964.000 kb on + strand, within PGA1_c09430 at 964.000 kb on + strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.003 kb on - strand, within PGA1_c09430 at 964.041 kb on - strand, within PGA1_c09430 at 964.167 kb on + strand at 964.167 kb on + strand at 964.167 kb on + strand at 964.178 kb on + strand at 964.221 kb on + strand at 964.221 kb on + strand at 964.241 kb on - strand at 964.270 kb on + strand at 964.278 kb on - strand at 964.303 kb on + strand at 964.303 kb on + strand at 964.311 kb on - strand at 964.311 kb on - strand at 964.392 kb on + strand at 964.402 kb on + strand at 964.410 kb on - strand at 964.415 kb on - strand at 964.415 kb on - strand at 964.430 kb on + strand at 964.438 kb on - strand at 964.450 kb on + strand at 964.452 kb on + strand at 964.458 kb on - strand at 964.458 kb on - strand at 964.463 kb on + strand at 964.470 kb on - strand at 964.476 kb on - strand at 964.478 kb on + strand at 964.486 kb on - strand at 964.491 kb on + strand at 964.499 kb on - strand at 964.505 kb on - strand at 964.512 kb on + strand at 964.525 kb on - strand at 964.526 kb on - strand at 964.546 kb on - strand at 964.555 kb on + strand at 964.555 kb on + strand at 964.563 kb on + strand at 964.563 kb on - strand at 964.563 kb on - strand at 964.563 kb on - strand at 964.568 kb on + strand at 964.571 kb on - strand at 964.571 kb on - strand at 964.588 kb on + strand at 964.626 kb on + strand at 964.685 kb on - strand at 964.713 kb on - strand at 964.744 kb on - strand at 964.760 kb on + strand at 964.767 kb on + strand at 964.808 kb on + strand at 964.808 kb on + strand at 964.816 kb on - strand at 964.816 kb on - strand at 964.823 kb on + strand at 964.890 kb on - strand at 964.920 kb on - strand at 964.968 kb on + strand, within PGA1_c09440 at 964.968 kb on + strand, within PGA1_c09440 at 964.980 kb on + strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 964.988 kb on - strand, within PGA1_c09440 at 965.030 kb on + strand, within PGA1_c09440 at 965.031 kb on - strand, within PGA1_c09440 at 965.031 kb on - strand, within PGA1_c09440 at 965.053 kb on - strand, within PGA1_c09440 at 965.053 kb on - strand, within PGA1_c09440 at 965.063 kb on + strand, within PGA1_c09440 at 965.071 kb on - strand, within PGA1_c09440 at 965.079 kb on + strand, within PGA1_c09440 at 965.156 kb on + strand, within PGA1_c09440 at 965.174 kb on - strand, within PGA1_c09440 at 965.180 kb on + strand, within PGA1_c09440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 962,115 + PGA1_c09420 0.75 +0.4 962,115 - PGA1_c09420 0.75 +1.7 962,127 - PGA1_c09420 0.76 -0.1 962,144 - PGA1_c09420 0.76 +0.8 962,167 - PGA1_c09420 0.77 +0.8 962,167 - PGA1_c09420 0.77 -0.8 962,172 - PGA1_c09420 0.77 +0.8 962,174 - PGA1_c09420 0.77 -0.3 962,182 - PGA1_c09420 0.77 +1.6 962,267 + PGA1_c09420 0.80 +0.6 962,267 + PGA1_c09420 0.80 +0.9 962,367 + PGA1_c09420 0.82 -1.0 962,444 + PGA1_c09420 0.85 +1.8 962,540 - PGA1_c09420 0.87 +1.2 962,616 - PGA1_c09420 0.89 +1.2 962,616 - PGA1_c09420 0.89 +1.6 962,616 - PGA1_c09420 0.89 -0.5 962,629 + PGA1_c09420 0.90 -1.2 962,693 + -0.2 962,743 + -2.8 962,743 + +0.8 962,780 + -0.0 962,872 + -0.8 962,945 - -1.0 962,956 + +1.7 963,057 + +0.1 963,074 - +0.6 963,202 + PGA1_c09430 0.17 +1.0 963,202 + PGA1_c09430 0.17 -0.4 963,202 + PGA1_c09430 0.17 +0.3 963,202 + PGA1_c09430 0.17 -1.9 963,210 - PGA1_c09430 0.18 +0.0 963,223 + PGA1_c09430 0.19 +0.6 963,326 - PGA1_c09430 0.28 -0.8 963,341 - PGA1_c09430 0.29 -0.8 963,381 - PGA1_c09430 0.32 -0.7 963,416 + PGA1_c09430 0.35 -0.2 963,458 + PGA1_c09430 0.39 +0.2 963,477 - PGA1_c09430 0.40 +0.7 963,481 + PGA1_c09430 0.40 -0.7 963,486 - PGA1_c09430 0.41 -0.8 963,527 + PGA1_c09430 0.44 +1.8 963,527 + PGA1_c09430 0.44 -0.8 963,527 + PGA1_c09430 0.44 -3.3 963,535 - PGA1_c09430 0.45 -0.6 963,569 - PGA1_c09430 0.48 -1.0 963,585 - PGA1_c09430 0.49 +0.0 963,595 + PGA1_c09430 0.50 +0.8 963,605 + PGA1_c09430 0.51 +0.9 963,608 - PGA1_c09430 0.51 -0.5 963,674 + PGA1_c09430 0.56 +0.4 963,706 + PGA1_c09430 0.59 +0.5 963,714 - PGA1_c09430 0.60 -0.0 963,872 + PGA1_c09430 0.73 -2.1 963,875 - PGA1_c09430 0.73 -0.4 963,886 + PGA1_c09430 0.74 -0.0 963,894 - PGA1_c09430 0.75 +0.6 963,915 - PGA1_c09430 0.76 +0.7 963,963 - PGA1_c09430 0.80 -1.0 964,000 + PGA1_c09430 0.83 -0.6 964,000 + PGA1_c09430 0.83 -2.2 964,003 - PGA1_c09430 0.84 -1.4 964,003 - PGA1_c09430 0.84 +0.5 964,003 - PGA1_c09430 0.84 -0.3 964,003 - PGA1_c09430 0.84 -0.1 964,041 - PGA1_c09430 0.87 -0.8 964,167 + +0.5 964,167 + +0.5 964,167 + -0.0 964,178 + +1.0 964,221 + +0.6 964,221 + -2.9 964,241 - -0.6 964,270 + -1.1 964,278 - -0.8 964,303 + -0.9 964,303 + -0.5 964,311 - -0.1 964,311 - +0.2 964,392 + -0.2 964,402 + -3.1 964,410 - +0.0 964,415 - -0.8 964,415 - +0.4 964,430 + -1.2 964,438 - +0.8 964,450 + +1.1 964,452 + -0.9 964,458 - +0.8 964,458 - -1.1 964,463 + +0.9 964,470 - -1.5 964,476 - -0.8 964,478 + -0.9 964,486 - +1.6 964,491 + +0.4 964,499 - -0.8 964,505 - +0.4 964,512 + +0.2 964,525 - -1.1 964,526 - -0.0 964,546 - -0.2 964,555 + +1.1 964,555 + +0.2 964,563 + -0.8 964,563 - +0.4 964,563 - -0.7 964,563 - -0.0 964,568 + +2.9 964,571 - +1.6 964,571 - -0.5 964,588 + +0.4 964,626 + -0.4 964,685 - +0.1 964,713 - -0.3 964,744 - -1.5 964,760 + +0.6 964,767 + +0.4 964,808 + -0.0 964,808 + -2.1 964,816 - -0.8 964,816 - -0.2 964,823 + +0.1 964,890 - -2.0 964,920 - -0.4 964,968 + PGA1_c09440 0.10 -1.2 964,968 + PGA1_c09440 0.10 +0.1 964,980 + PGA1_c09440 0.11 +0.3 964,988 - PGA1_c09440 0.11 +0.6 964,988 - PGA1_c09440 0.11 +1.7 964,988 - PGA1_c09440 0.11 +0.2 964,988 - PGA1_c09440 0.11 +0.2 965,030 + PGA1_c09440 0.14 +0.3 965,031 - PGA1_c09440 0.14 +0.3 965,031 - PGA1_c09440 0.14 -1.0 965,053 - PGA1_c09440 0.15 +2.0 965,053 - PGA1_c09440 0.15 -2.6 965,063 + PGA1_c09440 0.16 +1.0 965,071 - PGA1_c09440 0.16 -1.5 965,079 + PGA1_c09440 0.16 +1.7 965,156 + PGA1_c09440 0.21 +0.6 965,174 - PGA1_c09440 0.22 -0.4 965,180 + PGA1_c09440 0.22 -1.9
Or see this region's nucleotide sequence