Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07880 and PGA1_c07890 are separated by 65 nucleotides PGA1_c07890 and PGA1_c07900 are separated by 31 nucleotides
PGA1_c07880: PGA1_c07880 - alpha-glucoside transport system permease protein AglG, at 816,795 to 817,943
_c07880
PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) <small>(from data)</small>, at 818,009 to 819,667
_c07890
PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790
_c07900
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 817.082 kb on - strand, within PGA1_c07880 at 817.121 kb on - strand, within PGA1_c07880 at 817.123 kb on + strand, within PGA1_c07880 at 817.123 kb on + strand, within PGA1_c07880 at 817.123 kb on + strand, within PGA1_c07880 at 817.131 kb on - strand, within PGA1_c07880 at 817.131 kb on - strand, within PGA1_c07880 at 817.213 kb on + strand, within PGA1_c07880 at 817.213 kb on + strand, within PGA1_c07880 at 817.213 kb on + strand, within PGA1_c07880 at 817.213 kb on + strand, within PGA1_c07880 at 817.273 kb on - strand, within PGA1_c07880 at 817.301 kb on + strand, within PGA1_c07880 at 817.422 kb on + strand, within PGA1_c07880 at 817.445 kb on - strand, within PGA1_c07880 at 817.451 kb on + strand, within PGA1_c07880 at 817.520 kb on - strand, within PGA1_c07880 at 817.525 kb on - strand, within PGA1_c07880 at 817.525 kb on - strand, within PGA1_c07880 at 817.526 kb on - strand, within PGA1_c07880 at 817.697 kb on - strand, within PGA1_c07880 at 817.752 kb on + strand, within PGA1_c07880 at 817.754 kb on - strand, within PGA1_c07880 at 817.785 kb on + strand, within PGA1_c07880 at 817.848 kb on + strand at 817.848 kb on + strand at 817.955 kb on + strand at 817.963 kb on - strand at 817.968 kb on - strand at 817.973 kb on - strand at 817.973 kb on - strand at 817.985 kb on - strand at 818.103 kb on + strand at 818.111 kb on - strand at 818.151 kb on + strand at 818.236 kb on - strand, within PGA1_c07890 at 818.319 kb on + strand, within PGA1_c07890 at 818.325 kb on - strand, within PGA1_c07890 at 818.361 kb on + strand, within PGA1_c07890 at 818.361 kb on + strand, within PGA1_c07890 at 818.361 kb on + strand, within PGA1_c07890 at 818.361 kb on + strand, within PGA1_c07890 at 818.361 kb on + strand, within PGA1_c07890 at 818.366 kb on + strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.369 kb on - strand, within PGA1_c07890 at 818.384 kb on + strand, within PGA1_c07890 at 818.401 kb on - strand, within PGA1_c07890 at 818.428 kb on + strand, within PGA1_c07890 at 818.428 kb on + strand, within PGA1_c07890 at 818.433 kb on + strand, within PGA1_c07890 at 818.436 kb on - strand, within PGA1_c07890 at 818.436 kb on - strand, within PGA1_c07890 at 818.436 kb on - strand, within PGA1_c07890 at 818.436 kb on - strand, within PGA1_c07890 at 818.524 kb on + strand, within PGA1_c07890 at 818.531 kb on - strand, within PGA1_c07890 at 818.544 kb on - strand, within PGA1_c07890 at 818.566 kb on - strand, within PGA1_c07890 at 818.577 kb on - strand, within PGA1_c07890 at 818.628 kb on + strand, within PGA1_c07890 at 818.637 kb on + strand, within PGA1_c07890 at 818.656 kb on - strand, within PGA1_c07890 at 818.673 kb on + strand, within PGA1_c07890 at 818.975 kb on - strand, within PGA1_c07890 at 819.017 kb on + strand, within PGA1_c07890 at 819.082 kb on - strand, within PGA1_c07890 at 819.124 kb on + strand, within PGA1_c07890 at 819.134 kb on + strand, within PGA1_c07890 at 819.155 kb on + strand, within PGA1_c07890 at 819.228 kb on + strand, within PGA1_c07890 at 819.265 kb on - strand, within PGA1_c07890 at 819.290 kb on - strand, within PGA1_c07890 at 819.306 kb on + strand, within PGA1_c07890 at 819.310 kb on + strand, within PGA1_c07890 at 819.399 kb on + strand, within PGA1_c07890 at 819.449 kb on - strand, within PGA1_c07890 at 819.471 kb on - strand, within PGA1_c07890 at 819.493 kb on - strand, within PGA1_c07890 at 819.549 kb on + strand at 819.556 kb on + strand at 819.731 kb on + strand at 819.731 kb on + strand at 819.739 kb on - strand at 819.739 kb on - strand at 819.810 kb on + strand, within PGA1_c07900 at 819.836 kb on + strand, within PGA1_c07900 at 819.858 kb on + strand, within PGA1_c07900 at 819.933 kb on + strand, within PGA1_c07900 at 819.965 kb on + strand, within PGA1_c07900 at 819.973 kb on - strand, within PGA1_c07900 at 819.985 kb on + strand, within PGA1_c07900 at 820.031 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.099 kb on - strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.138 kb on + strand, within PGA1_c07900 at 820.168 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.208 kb on - strand, within PGA1_c07900 at 820.248 kb on + strand, within PGA1_c07900 at 820.256 kb on - strand, within PGA1_c07900 at 820.289 kb on - strand, within PGA1_c07900 at 820.304 kb on + strand, within PGA1_c07900 at 820.309 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.346 kb on + strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.354 kb on - strand, within PGA1_c07900 at 820.365 kb on - strand, within PGA1_c07900 at 820.470 kb on - strand, within PGA1_c07900 at 820.475 kb on + strand, within PGA1_c07900 at 820.521 kb on + strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.529 kb on - strand, within PGA1_c07900 at 820.574 kb on + strand, within PGA1_c07900 at 820.612 kb on - strand, within PGA1_c07900 at 820.620 kb on + strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900 at 820.648 kb on - strand, within PGA1_c07900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 817,082 - PGA1_c07880 0.25 -0.1 817,121 - PGA1_c07880 0.28 -0.4 817,123 + PGA1_c07880 0.29 +0.9 817,123 + PGA1_c07880 0.29 +1.1 817,123 + PGA1_c07880 0.29 +1.1 817,131 - PGA1_c07880 0.29 +0.2 817,131 - PGA1_c07880 0.29 +0.8 817,213 + PGA1_c07880 0.36 +1.4 817,213 + PGA1_c07880 0.36 +0.9 817,213 + PGA1_c07880 0.36 +1.6 817,213 + PGA1_c07880 0.36 +0.8 817,273 - PGA1_c07880 0.42 +1.0 817,301 + PGA1_c07880 0.44 +0.2 817,422 + PGA1_c07880 0.55 +1.1 817,445 - PGA1_c07880 0.57 +2.2 817,451 + PGA1_c07880 0.57 +1.5 817,520 - PGA1_c07880 0.63 +3.3 817,525 - PGA1_c07880 0.64 +1.8 817,525 - PGA1_c07880 0.64 +0.2 817,526 - PGA1_c07880 0.64 +1.5 817,697 - PGA1_c07880 0.79 +1.0 817,752 + PGA1_c07880 0.83 +1.5 817,754 - PGA1_c07880 0.83 +0.5 817,785 + PGA1_c07880 0.86 +2.3 817,848 + -0.1 817,848 + -1.3 817,955 + +0.7 817,963 - +1.7 817,968 - +0.7 817,973 - +0.3 817,973 - +1.4 817,985 - +0.4 818,103 + +1.7 818,111 - +1.8 818,151 + +1.5 818,236 - PGA1_c07890 0.14 -1.4 818,319 + PGA1_c07890 0.19 +1.2 818,325 - PGA1_c07890 0.19 -1.2 818,361 + PGA1_c07890 0.21 -0.4 818,361 + PGA1_c07890 0.21 +1.7 818,361 + PGA1_c07890 0.21 +1.2 818,361 + PGA1_c07890 0.21 +1.9 818,361 + PGA1_c07890 0.21 +0.7 818,366 + PGA1_c07890 0.22 +1.3 818,369 - PGA1_c07890 0.22 +1.5 818,369 - PGA1_c07890 0.22 +1.9 818,369 - PGA1_c07890 0.22 -0.2 818,369 - PGA1_c07890 0.22 +2.0 818,369 - PGA1_c07890 0.22 +1.3 818,369 - PGA1_c07890 0.22 +1.0 818,369 - PGA1_c07890 0.22 +1.6 818,384 + PGA1_c07890 0.23 +0.8 818,401 - PGA1_c07890 0.24 +0.8 818,428 + PGA1_c07890 0.25 +1.3 818,428 + PGA1_c07890 0.25 -0.1 818,433 + PGA1_c07890 0.26 +0.2 818,436 - PGA1_c07890 0.26 +1.9 818,436 - PGA1_c07890 0.26 -0.0 818,436 - PGA1_c07890 0.26 +0.5 818,436 - PGA1_c07890 0.26 +2.4 818,524 + PGA1_c07890 0.31 +4.7 818,531 - PGA1_c07890 0.31 +2.4 818,544 - PGA1_c07890 0.32 +1.9 818,566 - PGA1_c07890 0.34 +0.9 818,577 - PGA1_c07890 0.34 +1.7 818,628 + PGA1_c07890 0.37 +1.5 818,637 + PGA1_c07890 0.38 +1.4 818,656 - PGA1_c07890 0.39 +2.0 818,673 + PGA1_c07890 0.40 +1.4 818,975 - PGA1_c07890 0.58 +0.6 819,017 + PGA1_c07890 0.61 +1.3 819,082 - PGA1_c07890 0.65 +0.8 819,124 + PGA1_c07890 0.67 +0.7 819,134 + PGA1_c07890 0.68 +0.6 819,155 + PGA1_c07890 0.69 +0.6 819,228 + PGA1_c07890 0.73 -1.4 819,265 - PGA1_c07890 0.76 +1.4 819,290 - PGA1_c07890 0.77 +1.2 819,306 + PGA1_c07890 0.78 +0.7 819,310 + PGA1_c07890 0.78 -0.8 819,399 + PGA1_c07890 0.84 -0.9 819,449 - PGA1_c07890 0.87 -0.5 819,471 - PGA1_c07890 0.88 +1.4 819,493 - PGA1_c07890 0.89 +1.4 819,549 + +0.3 819,556 + +1.2 819,731 + +0.8 819,731 + +0.2 819,739 - +3.3 819,739 - +3.2 819,810 + PGA1_c07900 0.10 +1.2 819,836 + PGA1_c07900 0.13 +1.2 819,858 + PGA1_c07900 0.15 +1.6 819,933 + PGA1_c07900 0.21 +3.9 819,965 + PGA1_c07900 0.24 +0.4 819,973 - PGA1_c07900 0.25 +2.3 819,985 + PGA1_c07900 0.26 +2.2 820,031 - PGA1_c07900 0.30 +1.2 820,099 - PGA1_c07900 0.37 -0.9 820,099 - PGA1_c07900 0.37 +1.3 820,138 + PGA1_c07900 0.40 +0.9 820,138 + PGA1_c07900 0.40 -0.7 820,168 - PGA1_c07900 0.43 +0.1 820,208 - PGA1_c07900 0.47 +1.6 820,208 - PGA1_c07900 0.47 +0.7 820,248 + PGA1_c07900 0.50 +0.4 820,256 - PGA1_c07900 0.51 +0.7 820,289 - PGA1_c07900 0.54 +1.3 820,304 + PGA1_c07900 0.55 -0.8 820,309 + PGA1_c07900 0.56 +0.8 820,346 + PGA1_c07900 0.59 +0.4 820,346 + PGA1_c07900 0.59 +1.5 820,346 + PGA1_c07900 0.59 -0.1 820,346 + PGA1_c07900 0.59 +0.3 820,354 - PGA1_c07900 0.60 +1.8 820,354 - PGA1_c07900 0.60 +1.7 820,354 - PGA1_c07900 0.60 +0.8 820,365 - PGA1_c07900 0.61 +2.4 820,470 - PGA1_c07900 0.71 +0.2 820,475 + PGA1_c07900 0.71 +2.5 820,521 + PGA1_c07900 0.75 +1.7 820,529 - PGA1_c07900 0.76 +1.4 820,529 - PGA1_c07900 0.76 +1.5 820,574 + PGA1_c07900 0.80 +1.7 820,612 - PGA1_c07900 0.84 -0.0 820,620 + PGA1_c07900 0.84 -0.4 820,648 - PGA1_c07900 0.87 +0.9 820,648 - PGA1_c07900 0.87 -0.1 820,648 - PGA1_c07900 0.87 +2.7
Or see this region's nucleotide sequence