Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06450

Experiment: m.b. Cisplatin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06430 and PGA1_c06440 are separated by 121 nucleotidesPGA1_c06440 and PGA1_c06450 are separated by 13 nucleotidesPGA1_c06450 and PGA1_c06460 are separated by 118 nucleotides PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804 _c06430 PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456 _c06440 PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111 _c06450 PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008 _c06460 Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1 2at 658.475 kb on - strand, within PGA1_c06430at 658.549 kb on + strand, within PGA1_c06430at 658.562 kb on + strand, within PGA1_c06430at 658.570 kb on - strand, within PGA1_c06430at 658.599 kb on + strand, within PGA1_c06430at 658.654 kb on + strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.786 kb on - strandat 658.825 kb on - strandat 658.835 kb on + strandat 658.840 kb on + strandat 658.876 kb on + strandat 658.884 kb on - strandat 658.907 kb on + strandat 658.907 kb on + strandat 658.915 kb on + strandat 658.915 kb on + strandat 659.027 kb on - strand, within PGA1_c06440at 659.103 kb on - strand, within PGA1_c06440at 659.239 kb on + strand, within PGA1_c06440at 659.259 kb on + strand, within PGA1_c06440at 659.273 kb on + strand, within PGA1_c06440at 659.274 kb on + strand, within PGA1_c06440at 659.284 kb on + strand, within PGA1_c06440at 659.312 kb on - strand, within PGA1_c06440at 659.369 kb on + strand, within PGA1_c06440at 659.384 kb on + strand, within PGA1_c06440at 659.415 kb on + strandat 659.420 kb on + strandat 659.437 kb on - strandat 659.534 kb on - strandat 659.550 kb on + strand, within PGA1_c06450at 659.566 kb on - strand, within PGA1_c06450at 659.581 kb on - strand, within PGA1_c06450at 659.639 kb on - strand, within PGA1_c06450at 659.711 kb on - strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.730 kb on + strand, within PGA1_c06450at 659.795 kb on - strand, within PGA1_c06450at 659.798 kb on + strand, within PGA1_c06450at 659.839 kb on + strand, within PGA1_c06450at 659.864 kb on + strand, within PGA1_c06450at 659.870 kb on - strand, within PGA1_c06450at 659.887 kb on - strand, within PGA1_c06450at 660.028 kb on + strand, within PGA1_c06450at 660.059 kb on - strandat 660.059 kb on - strandat 660.092 kb on + strandat 660.141 kb on + strandat 660.155 kb on + strandat 660.187 kb on + strandat 660.223 kb on + strandat 660.269 kb on - strandat 660.271 kb on + strandat 660.283 kb on - strandat 660.327 kb on - strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.339 kb on - strandat 660.349 kb on - strandat 660.349 kb on - strandat 660.349 kb on - strandat 660.360 kb on + strandat 660.387 kb on + strandat 660.387 kb on + strandat 660.387 kb on + strandat 660.431 kb on + strand, within PGA1_c06460at 660.457 kb on + strand, within PGA1_c06460at 660.465 kb on - strand, within PGA1_c06460at 660.567 kb on - strand, within PGA1_c06460at 660.620 kb on - strand, within PGA1_c06460at 660.672 kb on + strand, within PGA1_c06460at 660.673 kb on - strand, within PGA1_c06460at 660.673 kb on - strand, within PGA1_c06460at 660.777 kb on - strand, within PGA1_c06460at 660.777 kb on - strand, within PGA1_c06460at 660.791 kb on + strand, within PGA1_c06460at 660.791 kb on + strand, within PGA1_c06460at 660.841 kb on + strand, within PGA1_c06460at 660.849 kb on - strand, within PGA1_c06460at 660.849 kb on - strand, within PGA1_c06460at 660.857 kb on - strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.993 kb on - strand, within PGA1_c06460at 661.017 kb on - strand, within PGA1_c06460at 661.034 kb on - strand, within PGA1_c06460at 661.054 kb on + strand, within PGA1_c06460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
remove
658,475 - PGA1_c06430 0.58 +0.8
658,549 + PGA1_c06430 0.67 -0.4
658,562 + PGA1_c06430 0.69 -0.1
658,570 - PGA1_c06430 0.70 -0.9
658,599 + PGA1_c06430 0.74 +0.6
658,654 + PGA1_c06430 0.81 -0.4
658,721 - PGA1_c06430 0.89 +1.1
658,721 - PGA1_c06430 0.89 -0.3
658,786 - -0.5
658,825 - -2.2
658,835 + +0.5
658,840 + -0.5
658,876 + -0.3
658,884 - -2.1
658,907 + +0.9
658,907 + -1.7
658,915 + +1.9
658,915 + +0.9
659,027 - PGA1_c06440 0.19 +0.2
659,103 - PGA1_c06440 0.33 -1.6
659,239 + PGA1_c06440 0.59 -0.7
659,259 + PGA1_c06440 0.63 +0.5
659,273 + PGA1_c06440 0.65 +0.0
659,274 + PGA1_c06440 0.66 +0.3
659,284 + PGA1_c06440 0.67 +0.5
659,312 - PGA1_c06440 0.73 +1.2
659,369 + PGA1_c06440 0.83 -0.3
659,384 + PGA1_c06440 0.86 -0.7
659,415 + +0.3
659,420 + -0.6
659,437 - -0.7
659,534 - -1.8
659,550 + PGA1_c06450 0.12 -1.3
659,566 - PGA1_c06450 0.15 -0.1
659,581 - PGA1_c06450 0.17 -0.7
659,639 - PGA1_c06450 0.26 +1.2
659,711 - PGA1_c06450 0.38 +0.5
659,713 + PGA1_c06450 0.38 -0.1
659,713 + PGA1_c06450 0.38 -2.1
659,721 - PGA1_c06450 0.39 -0.7
659,721 - PGA1_c06450 0.39 -1.1
659,726 - PGA1_c06450 0.40 -1.3
659,726 - PGA1_c06450 0.40 -2.4
659,730 + PGA1_c06450 0.40 -0.6
659,795 - PGA1_c06450 0.51 +2.1
659,798 + PGA1_c06450 0.51 +0.2
659,839 + PGA1_c06450 0.57 -0.1
659,864 + PGA1_c06450 0.61 +0.0
659,870 - PGA1_c06450 0.62 -1.4
659,887 - PGA1_c06450 0.65 -1.1
660,028 + PGA1_c06450 0.87 -0.3
660,059 - +0.6
660,059 - +0.2
660,092 + -0.8
660,141 + +1.3
660,155 + +0.1
660,187 + -2.1
660,223 + -0.2
660,269 - -0.6
660,271 + +0.5
660,283 - +1.4
660,327 - -0.2
660,331 + +0.4
660,331 + +1.2
660,331 + -1.3
660,331 + +0.5
660,339 - -1.1
660,349 - +0.7
660,349 - +1.9
660,349 - +0.8
660,360 + -0.1
660,387 + +0.5
660,387 + -0.7
660,387 + +0.9
660,431 + PGA1_c06460 0.11 -0.1
660,457 + PGA1_c06460 0.13 -1.1
660,465 - PGA1_c06460 0.13 +0.6
660,567 - PGA1_c06460 0.19 +0.0
660,620 - PGA1_c06460 0.22 +0.1
660,672 + PGA1_c06460 0.25 +0.9
660,673 - PGA1_c06460 0.25 +0.9
660,673 - PGA1_c06460 0.25 -0.9
660,777 - PGA1_c06460 0.31 -1.2
660,777 - PGA1_c06460 0.31 +0.1
660,791 + PGA1_c06460 0.32 +0.5
660,791 + PGA1_c06460 0.32 +0.6
660,841 + PGA1_c06460 0.34 +0.9
660,849 - PGA1_c06460 0.35 -1.1
660,849 - PGA1_c06460 0.35 +0.5
660,857 - PGA1_c06460 0.35 -0.3
660,975 + PGA1_c06460 0.42 +0.0
660,975 + PGA1_c06460 0.42 -0.8
660,975 + PGA1_c06460 0.42 -1.5
660,975 + PGA1_c06460 0.42 -1.0
660,975 + PGA1_c06460 0.42 -0.8
660,975 + PGA1_c06460 0.42 -0.1
660,975 + PGA1_c06460 0.42 +1.0
660,975 + PGA1_c06460 0.42 +0.5
660,975 + PGA1_c06460 0.42 -0.9
660,975 + PGA1_c06460 0.42 -0.5
660,983 - PGA1_c06460 0.42 +0.8
660,983 - PGA1_c06460 0.42 -1.4
660,983 - PGA1_c06460 0.42 -1.5
660,983 - PGA1_c06460 0.42 -0.2
660,983 - PGA1_c06460 0.42 +0.4
660,983 - PGA1_c06460 0.42 +1.5
660,983 - PGA1_c06460 0.42 -2.3
660,983 - PGA1_c06460 0.42 +0.8
660,983 - PGA1_c06460 0.42 +0.4
660,993 - PGA1_c06460 0.43 +1.4
661,017 - PGA1_c06460 0.44 +0.5
661,034 - PGA1_c06460 0.45 -0.7
661,054 + PGA1_c06460 0.46 +1.4

Or see this region's nucleotide sequence