Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00650 and PGA1_262p00660 are separated by 83 nucleotides PGA1_262p00660 and PGA1_262p00670 overlap by 11 nucleotides
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
PGA1_262p00660: PGA1_262p00660 - Predicted periplasmic protein, at 76,516 to 77,337
_262p00660
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 75.673 kb on - strand, within PGA1_262p00650 at 75.715 kb on + strand, within PGA1_262p00650 at 75.938 kb on - strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.055 kb on + strand, within PGA1_262p00650 at 76.380 kb on - strand at 76.467 kb on - strand at 76.474 kb on - strand at 76.545 kb on + strand at 76.837 kb on + strand, within PGA1_262p00660 at 76.949 kb on + strand, within PGA1_262p00660 at 77.022 kb on - strand, within PGA1_262p00660 at 77.059 kb on + strand, within PGA1_262p00660 at 77.189 kb on + strand, within PGA1_262p00660 at 77.215 kb on + strand, within PGA1_262p00660 at 77.303 kb on + strand at 77.475 kb on - strand, within PGA1_262p00670 at 77.637 kb on + strand, within PGA1_262p00670 at 77.652 kb on - strand, within PGA1_262p00670 at 77.664 kb on + strand, within PGA1_262p00670 at 77.670 kb on - strand, within PGA1_262p00670 at 77.693 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.780 kb on + strand, within PGA1_262p00670 at 77.826 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.940 kb on - strand, within PGA1_262p00670 at 77.975 kb on - strand, within PGA1_262p00670 at 77.977 kb on + strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.123 kb on - strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.175 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.271 kb on - strand, within PGA1_262p00670
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 75,673 - PGA1_262p00650 0.35 -0.4 75,715 + PGA1_262p00650 0.39 -1.8 75,938 - PGA1_262p00650 0.58 -1.0 76,014 + PGA1_262p00650 0.64 -0.9 76,014 + PGA1_262p00650 0.64 +0.4 76,022 - PGA1_262p00650 0.65 -0.5 76,022 - PGA1_262p00650 0.65 +0.3 76,022 - PGA1_262p00650 0.65 +0.0 76,055 + PGA1_262p00650 0.68 +0.7 76,380 - -0.6 76,467 - -0.5 76,474 - -3.0 76,545 + +1.4 76,837 + PGA1_262p00660 0.39 -0.5 76,949 + PGA1_262p00660 0.53 +0.5 77,022 - PGA1_262p00660 0.62 +0.5 77,059 + PGA1_262p00660 0.66 +0.6 77,189 + PGA1_262p00660 0.82 +1.4 77,215 + PGA1_262p00660 0.85 +1.0 77,303 + +0.3 77,475 - PGA1_262p00670 0.11 +0.6 77,637 + PGA1_262p00670 0.23 +0.2 77,652 - PGA1_262p00670 0.24 -1.3 77,664 + PGA1_262p00670 0.25 -0.3 77,670 - PGA1_262p00670 0.25 -1.0 77,693 + PGA1_262p00670 0.27 +0.0 77,770 + PGA1_262p00670 0.33 +0.4 77,770 + PGA1_262p00670 0.33 -3.1 77,778 - PGA1_262p00670 0.33 -0.3 77,778 - PGA1_262p00670 0.33 -1.0 77,778 - PGA1_262p00670 0.33 +0.3 77,780 + PGA1_262p00670 0.34 -1.5 77,826 + PGA1_262p00670 0.37 +0.8 77,932 + PGA1_262p00670 0.45 +0.6 77,932 + PGA1_262p00670 0.45 -0.7 77,940 - PGA1_262p00670 0.46 -1.4 77,975 - PGA1_262p00670 0.48 -0.8 77,977 + PGA1_262p00670 0.48 -0.4 78,082 - PGA1_262p00670 0.56 +1.6 78,082 - PGA1_262p00670 0.56 +0.0 78,123 - PGA1_262p00670 0.59 -1.4 78,167 + PGA1_262p00670 0.62 +0.8 78,167 + PGA1_262p00670 0.62 +1.0 78,175 - PGA1_262p00670 0.63 +0.6 78,242 - PGA1_262p00670 0.68 -1.1 78,242 - PGA1_262p00670 0.68 -0.5 78,263 + PGA1_262p00670 0.69 -0.1 78,263 + PGA1_262p00670 0.69 +0.8 78,271 - PGA1_262p00670 0.70 -0.2
Or see this region's nucleotide sequence