Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00580 and PGA1_262p00590 are separated by 34 nucleotides PGA1_262p00590 and PGA1_262p00600 overlap by 4 nucleotides
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
PGA1_262p00590: PGA1_262p00590 - Protein of unknown function (DUF2886)., at 68,198 to 68,857
_262p00590
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
Position (kb) 68
69 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.738 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.101 kb on - strand at 68.197 kb on + strand at 68.208 kb on + strand at 68.322 kb on - strand, within PGA1_262p00590 at 68.423 kb on - strand, within PGA1_262p00590 at 68.643 kb on - strand, within PGA1_262p00590 at 68.709 kb on - strand, within PGA1_262p00590 at 68.742 kb on - strand, within PGA1_262p00590 at 68.771 kb on + strand, within PGA1_262p00590 at 68.798 kb on - strand at 68.850 kb on + strand at 68.892 kb on + strand at 68.956 kb on + strand at 68.982 kb on - strand at 69.035 kb on + strand at 69.043 kb on - strand at 69.189 kb on + strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.298 kb on - strand, within PGA1_262p00600 at 69.367 kb on + strand, within PGA1_262p00600 at 69.488 kb on + strand, within PGA1_262p00600 at 69.502 kb on - strand, within PGA1_262p00600 at 69.507 kb on - strand, within PGA1_262p00600 at 69.509 kb on + strand, within PGA1_262p00600 at 69.530 kb on + strand, within PGA1_262p00600 at 69.738 kb on - strand, within PGA1_262p00600 at 69.760 kb on - strand, within PGA1_262p00600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 67,205 - PGA1_262p00580 0.30 +1.0 67,234 + PGA1_262p00580 0.32 -1.0 67,240 - PGA1_262p00580 0.33 +0.3 67,368 - PGA1_262p00580 0.42 +0.2 67,368 - PGA1_262p00580 0.42 +1.6 67,738 - PGA1_262p00580 0.69 -0.7 67,875 - PGA1_262p00580 0.79 -0.4 67,875 - PGA1_262p00580 0.79 -0.4 67,875 - PGA1_262p00580 0.79 +1.9 68,008 - PGA1_262p00580 0.89 -0.2 68,008 - PGA1_262p00580 0.89 +0.7 68,101 - +0.7 68,197 + -2.3 68,208 + -1.0 68,322 - PGA1_262p00590 0.19 +0.7 68,423 - PGA1_262p00590 0.34 +0.6 68,643 - PGA1_262p00590 0.67 -0.5 68,709 - PGA1_262p00590 0.77 +1.9 68,742 - PGA1_262p00590 0.82 +0.0 68,771 + PGA1_262p00590 0.87 +0.3 68,798 - -0.2 68,850 + +0.7 68,892 + +0.2 68,956 + +0.0 68,982 - -0.1 69,035 + +0.3 69,043 - -0.8 69,189 + PGA1_262p00600 0.16 -0.4 69,293 - PGA1_262p00600 0.21 +0.1 69,293 - PGA1_262p00600 0.21 +0.2 69,293 - PGA1_262p00600 0.21 +1.6 69,298 - PGA1_262p00600 0.21 +1.4 69,367 + PGA1_262p00600 0.24 -1.0 69,488 + PGA1_262p00600 0.30 +0.7 69,502 - PGA1_262p00600 0.30 +0.6 69,507 - PGA1_262p00600 0.31 +0.9 69,509 + PGA1_262p00600 0.31 -0.4 69,530 + PGA1_262p00600 0.32 +0.0 69,738 - PGA1_262p00600 0.42 -0.6 69,760 - PGA1_262p00600 0.43 -0.6
Or see this region's nucleotide sequence