Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3316 and HP15_3317 are separated by 24 nucleotides HP15_3317 and HP15_3318 are separated by 57 nucleotides HP15_3318 and HP15_3319 are separated by 95 nucleotides HP15_3319 and HP15_3320 are separated by 41 nucleotides
HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657
_3316
HP15_3317: HP15_3317 - acetylglutamate kinase, at 3,477,682 to 3,478,578
_3317
HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278
_3318
HP15_3319: HP15_3319 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 3,481,374 to 3,481,835
_3319
HP15_3320: HP15_3320 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase, at 3,481,877 to 3,483,076
_3320
Position (kb)
3478
3479
3480
3481
3482 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3477.796 kb on + strand, within HP15_3317 at 3478.281 kb on - strand, within HP15_3317 at 3478.567 kb on + strand at 3478.691 kb on + strand at 3478.743 kb on + strand at 3478.756 kb on - strand at 3478.855 kb on + strand at 3479.272 kb on + strand, within HP15_3318 at 3479.414 kb on + strand, within HP15_3318 at 3479.448 kb on - strand, within HP15_3318 at 3479.465 kb on - strand, within HP15_3318 at 3479.504 kb on + strand, within HP15_3318 at 3479.505 kb on + strand, within HP15_3318 at 3479.512 kb on - strand, within HP15_3318 at 3479.638 kb on + strand, within HP15_3318 at 3479.723 kb on - strand, within HP15_3318 at 3479.777 kb on + strand, within HP15_3318 at 3479.806 kb on + strand, within HP15_3318 at 3479.808 kb on + strand, within HP15_3318 at 3479.860 kb on + strand, within HP15_3318 at 3479.868 kb on - strand, within HP15_3318 at 3480.090 kb on - strand, within HP15_3318 at 3480.122 kb on + strand, within HP15_3318 at 3480.257 kb on + strand, within HP15_3318 at 3480.317 kb on - strand, within HP15_3318 at 3480.324 kb on - strand, within HP15_3318 at 3480.389 kb on + strand, within HP15_3318 at 3480.499 kb on - strand, within HP15_3318 at 3480.501 kb on - strand, within HP15_3318 at 3480.501 kb on - strand, within HP15_3318 at 3480.502 kb on - strand, within HP15_3318 at 3480.506 kb on + strand, within HP15_3318 at 3480.514 kb on - strand, within HP15_3318 at 3480.593 kb on + strand, within HP15_3318 at 3480.593 kb on + strand, within HP15_3318 at 3480.601 kb on - strand, within HP15_3318 at 3480.647 kb on + strand, within HP15_3318 at 3480.793 kb on - strand, within HP15_3318 at 3480.964 kb on + strand, within HP15_3318 at 3480.991 kb on + strand, within HP15_3318 at 3481.188 kb on + strand at 3481.280 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.340 kb on - strand at 3481.351 kb on + strand at 3481.841 kb on - strand at 3481.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,477,796 + HP15_3317 0.13 -2.9 3,478,281 - HP15_3317 0.67 -1.9 3,478,567 + -4.4 3,478,691 + -1.3 3,478,743 + -5.0 3,478,756 - +1.0 3,478,855 + -0.4 3,479,272 + HP15_3318 0.24 +0.7 3,479,414 + HP15_3318 0.29 +1.1 3,479,448 - HP15_3318 0.31 +0.9 3,479,465 - HP15_3318 0.31 -0.8 3,479,504 + HP15_3318 0.33 -0.3 3,479,505 + HP15_3318 0.33 -0.8 3,479,512 - HP15_3318 0.33 +1.0 3,479,638 + HP15_3318 0.38 +0.6 3,479,723 - HP15_3318 0.41 -1.1 3,479,777 + HP15_3318 0.43 -0.7 3,479,806 + HP15_3318 0.44 -0.4 3,479,808 + HP15_3318 0.44 -1.3 3,479,860 + HP15_3318 0.46 -1.3 3,479,868 - HP15_3318 0.47 -0.1 3,480,090 - HP15_3318 0.55 +1.0 3,480,122 + HP15_3318 0.56 +0.2 3,480,257 + HP15_3318 0.61 +1.5 3,480,317 - HP15_3318 0.64 +0.6 3,480,324 - HP15_3318 0.64 +0.5 3,480,389 + HP15_3318 0.66 -0.4 3,480,499 - HP15_3318 0.70 +1.5 3,480,501 - HP15_3318 0.71 +0.8 3,480,501 - HP15_3318 0.71 +0.6 3,480,502 - HP15_3318 0.71 -1.0 3,480,506 + HP15_3318 0.71 +0.7 3,480,514 - HP15_3318 0.71 +0.3 3,480,593 + HP15_3318 0.74 -1.9 3,480,593 + HP15_3318 0.74 -0.9 3,480,601 - HP15_3318 0.74 +0.7 3,480,647 + HP15_3318 0.76 -0.9 3,480,793 - HP15_3318 0.82 -0.1 3,480,964 + HP15_3318 0.88 -0.6 3,480,991 + HP15_3318 0.89 -0.4 3,481,188 + -1.5 3,481,280 - +0.5 3,481,340 - -0.3 3,481,340 - -0.3 3,481,340 - -0.2 3,481,340 - +1.2 3,481,351 + +1.0 3,481,841 - -0.5 3,481,849 - +1.5
Or see this region's nucleotide sequence