Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3309 and HP15_3310 are separated by 135 nucleotides HP15_3310 and HP15_3311 are separated by 5 nucleotides HP15_3311 and HP15_3312 are separated by 18 nucleotides
HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846
_3309
HP15_3310: HP15_3310 - pirin family protein, at 3,466,982 to 3,467,830
_3310
HP15_3311: HP15_3311 - phosphoribulokinase, at 3,467,836 to 3,468,702
_3311
HP15_3312: HP15_3312 - diguanylate cyclase/phosphodiesterase, at 3,468,721 to 3,472,482
_3312
Position (kb)
3466
3467
3468 Strain fitness (log2 ratio)
-2
-1
0
1 at 3465.986 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.121 kb on - strand at 3466.137 kb on + strand, within HP15_3309 at 3466.187 kb on + strand, within HP15_3309 at 3466.200 kb on + strand, within HP15_3309 at 3466.241 kb on - strand, within HP15_3309 at 3466.256 kb on + strand, within HP15_3309 at 3466.318 kb on - strand, within HP15_3309 at 3466.411 kb on - strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.481 kb on - strand, within HP15_3309 at 3466.599 kb on - strand, within HP15_3309 at 3466.670 kb on - strand, within HP15_3309 at 3466.701 kb on - strand, within HP15_3309 at 3466.963 kb on - strand at 3466.965 kb on + strand at 3466.980 kb on + strand at 3467.003 kb on - strand at 3467.077 kb on - strand, within HP15_3310 at 3467.110 kb on + strand, within HP15_3310 at 3467.170 kb on - strand, within HP15_3310 at 3467.297 kb on - strand, within HP15_3310 at 3467.468 kb on + strand, within HP15_3310 at 3467.481 kb on - strand, within HP15_3310 at 3467.547 kb on + strand, within HP15_3310 at 3467.587 kb on - strand, within HP15_3310 at 3467.593 kb on + strand, within HP15_3310 at 3467.604 kb on + strand, within HP15_3310 at 3467.780 kb on + strand at 3467.988 kb on + strand, within HP15_3311 at 3467.991 kb on - strand, within HP15_3311 at 3468.068 kb on - strand, within HP15_3311 at 3468.251 kb on + strand, within HP15_3311 at 3468.305 kb on - strand, within HP15_3311 at 3468.386 kb on + strand, within HP15_3311 at 3468.521 kb on + strand, within HP15_3311 at 3468.552 kb on - strand, within HP15_3311 at 3468.589 kb on - strand, within HP15_3311 at 3468.596 kb on - strand, within HP15_3311 at 3468.603 kb on + strand, within HP15_3311 at 3468.733 kb on + strand at 3468.771 kb on - strand at 3468.797 kb on - strand at 3468.807 kb on - strand at 3468.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,465,986 + -0.0 3,466,011 + +0.9 3,466,011 + -0.2 3,466,011 + -0.2 3,466,121 - +0.3 3,466,137 + HP15_3309 0.11 +0.7 3,466,187 + HP15_3309 0.17 +0.6 3,466,200 + HP15_3309 0.19 +1.3 3,466,241 - HP15_3309 0.24 +0.9 3,466,256 + HP15_3309 0.26 +0.2 3,466,318 - HP15_3309 0.33 -0.3 3,466,411 - HP15_3309 0.45 -0.1 3,466,473 + HP15_3309 0.53 -0.3 3,466,473 + HP15_3309 0.53 -0.1 3,466,481 - HP15_3309 0.54 +1.5 3,466,599 - HP15_3309 0.69 +0.5 3,466,670 - HP15_3309 0.78 -0.3 3,466,701 - HP15_3309 0.82 -0.7 3,466,963 - -0.1 3,466,965 + -0.2 3,466,980 + +0.8 3,467,003 - -0.4 3,467,077 - HP15_3310 0.11 -0.9 3,467,110 + HP15_3310 0.15 -0.5 3,467,170 - HP15_3310 0.22 +0.2 3,467,297 - HP15_3310 0.37 +0.8 3,467,468 + HP15_3310 0.57 +1.7 3,467,481 - HP15_3310 0.59 +0.3 3,467,547 + HP15_3310 0.67 -0.6 3,467,587 - HP15_3310 0.71 -0.2 3,467,593 + HP15_3310 0.72 +0.2 3,467,604 + HP15_3310 0.73 +0.1 3,467,780 + -0.2 3,467,988 + HP15_3311 0.18 +0.7 3,467,991 - HP15_3311 0.18 -0.1 3,468,068 - HP15_3311 0.27 +0.4 3,468,251 + HP15_3311 0.48 +0.9 3,468,305 - HP15_3311 0.54 +0.7 3,468,386 + HP15_3311 0.63 +0.3 3,468,521 + HP15_3311 0.79 -0.3 3,468,552 - HP15_3311 0.83 -1.3 3,468,589 - HP15_3311 0.87 +0.7 3,468,596 - HP15_3311 0.88 -0.5 3,468,603 + HP15_3311 0.88 +0.9 3,468,733 + -1.9 3,468,771 - -1.3 3,468,797 - -0.3 3,468,807 - -0.5 3,468,822 - +0.9
Or see this region's nucleotide sequence