Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29720 and PGA1_c29730 are separated by 90 nucleotides PGA1_c29730 and PGA1_c29740 are separated by 36 nucleotides PGA1_c29740 and PGA1_c29750 are separated by 39 nucleotides PGA1_c29750 and PGA1_c29760 are separated by 84 nucleotides
PGA1_c29720: PGA1_c29720 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) , at 3,109,033 to 3,110,481
_c29720
PGA1_c29730: PGA1_c29730 - Predicted membrane protein, at 3,110,572 to 3,111,330
_c29730
PGA1_c29740: PGA1_c29740 - hypothetical protein, at 3,111,367 to 3,111,735
_c29740
PGA1_c29750: PGA1_c29750 - putative ribosomal RNA large subunit methyltransferase, at 3,111,775 to 3,112,245
_c29750
PGA1_c29760: PGA1_c29760 - iojap-like ribosome-associated protein, at 3,112,330 to 3,112,698
_c29760
Position (kb)
3111
3112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3110.399 kb on + strand at 3110.478 kb on + strand at 3110.478 kb on + strand at 3110.478 kb on + strand at 3110.478 kb on + strand at 3110.486 kb on - strand at 3110.491 kb on - strand at 3110.491 kb on - strand at 3110.491 kb on - strand at 3110.524 kb on - strand at 3110.570 kb on + strand at 3110.570 kb on + strand at 3110.570 kb on + strand at 3110.578 kb on - strand at 3110.578 kb on - strand at 3110.598 kb on + strand at 3110.606 kb on - strand at 3110.653 kb on - strand, within PGA1_c29730 at 3110.704 kb on - strand, within PGA1_c29730 at 3110.751 kb on - strand, within PGA1_c29730 at 3110.843 kb on + strand, within PGA1_c29730 at 3110.851 kb on - strand, within PGA1_c29730 at 3110.851 kb on - strand, within PGA1_c29730 at 3110.851 kb on - strand, within PGA1_c29730 at 3110.851 kb on - strand, within PGA1_c29730 at 3110.898 kb on - strand, within PGA1_c29730 at 3110.898 kb on - strand, within PGA1_c29730 at 3110.922 kb on - strand, within PGA1_c29730 at 3110.991 kb on + strand, within PGA1_c29730 at 3111.008 kb on + strand, within PGA1_c29730 at 3111.030 kb on + strand, within PGA1_c29730 at 3111.030 kb on + strand, within PGA1_c29730 at 3111.038 kb on - strand, within PGA1_c29730 at 3111.038 kb on - strand, within PGA1_c29730 at 3111.038 kb on - strand, within PGA1_c29730 at 3111.106 kb on + strand, within PGA1_c29730 at 3111.188 kb on - strand, within PGA1_c29730 at 3111.193 kb on + strand, within PGA1_c29730 at 3111.200 kb on + strand, within PGA1_c29730 at 3111.201 kb on - strand, within PGA1_c29730 at 3111.208 kb on - strand, within PGA1_c29730 at 3111.245 kb on + strand, within PGA1_c29730 at 3111.263 kb on - strand at 3111.346 kb on + strand at 3111.351 kb on + strand at 3111.353 kb on + strand at 3111.353 kb on + strand at 3111.353 kb on + strand at 3111.353 kb on + strand at 3111.366 kb on - strand at 3111.410 kb on + strand, within PGA1_c29740 at 3111.463 kb on + strand, within PGA1_c29740 at 3111.495 kb on - strand, within PGA1_c29740 at 3111.504 kb on - strand, within PGA1_c29740 at 3111.559 kb on + strand, within PGA1_c29740 at 3111.668 kb on - strand, within PGA1_c29740 at 3111.690 kb on - strand, within PGA1_c29740 at 3111.701 kb on + strand at 3111.773 kb on + strand at 3111.773 kb on + strand at 3111.781 kb on - strand at 3111.781 kb on - strand at 3111.781 kb on - strand at 3111.781 kb on - strand at 3111.781 kb on - strand at 3111.818 kb on + strand at 3111.826 kb on - strand, within PGA1_c29750 at 3111.881 kb on - strand, within PGA1_c29750 at 3111.927 kb on - strand, within PGA1_c29750 at 3111.954 kb on - strand, within PGA1_c29750 at 3111.954 kb on - strand, within PGA1_c29750 at 3111.954 kb on - strand, within PGA1_c29750 at 3112.026 kb on + strand, within PGA1_c29750 at 3112.026 kb on + strand, within PGA1_c29750 at 3112.039 kb on + strand, within PGA1_c29750 at 3112.040 kb on - strand, within PGA1_c29750 at 3112.056 kb on + strand, within PGA1_c29750 at 3112.069 kb on - strand, within PGA1_c29750 at 3112.142 kb on - strand, within PGA1_c29750 at 3112.142 kb on - strand, within PGA1_c29750 at 3112.142 kb on - strand, within PGA1_c29750 at 3112.207 kb on + strand at 3112.208 kb on + strand at 3112.275 kb on + strand at 3112.295 kb on - strand at 3112.394 kb on - strand, within PGA1_c29760 at 3112.409 kb on - strand, within PGA1_c29760 at 3112.414 kb on - strand, within PGA1_c29760 at 3112.469 kb on + strand, within PGA1_c29760 at 3112.476 kb on - strand, within PGA1_c29760 at 3112.561 kb on + strand, within PGA1_c29760 at 3112.562 kb on + strand, within PGA1_c29760 at 3112.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 3,110,399 + +1.9 3,110,478 + -0.9 3,110,478 + -0.8 3,110,478 + +1.3 3,110,478 + -1.0 3,110,486 - -2.4 3,110,491 - -1.2 3,110,491 - +0.8 3,110,491 - -1.8 3,110,524 - -1.3 3,110,570 + +0.5 3,110,570 + +0.2 3,110,570 + +0.5 3,110,578 - +1.0 3,110,578 - +1.0 3,110,598 + +2.9 3,110,606 - -1.3 3,110,653 - PGA1_c29730 0.11 -1.8 3,110,704 - PGA1_c29730 0.17 -1.2 3,110,751 - PGA1_c29730 0.24 -0.9 3,110,843 + PGA1_c29730 0.36 +1.1 3,110,851 - PGA1_c29730 0.37 +1.0 3,110,851 - PGA1_c29730 0.37 +0.7 3,110,851 - PGA1_c29730 0.37 -0.4 3,110,851 - PGA1_c29730 0.37 +0.1 3,110,898 - PGA1_c29730 0.43 +0.7 3,110,898 - PGA1_c29730 0.43 +0.8 3,110,922 - PGA1_c29730 0.46 -0.3 3,110,991 + PGA1_c29730 0.55 +0.2 3,111,008 + PGA1_c29730 0.57 -0.2 3,111,030 + PGA1_c29730 0.60 +0.5 3,111,030 + PGA1_c29730 0.60 -0.1 3,111,038 - PGA1_c29730 0.61 +0.7 3,111,038 - PGA1_c29730 0.61 -0.5 3,111,038 - PGA1_c29730 0.61 -0.3 3,111,106 + PGA1_c29730 0.70 +0.1 3,111,188 - PGA1_c29730 0.81 +0.3 3,111,193 + PGA1_c29730 0.82 -0.6 3,111,200 + PGA1_c29730 0.83 -3.3 3,111,201 - PGA1_c29730 0.83 +0.4 3,111,208 - PGA1_c29730 0.84 -0.6 3,111,245 + PGA1_c29730 0.89 +0.0 3,111,263 - +0.9 3,111,346 + -1.8 3,111,351 + -0.5 3,111,353 + -1.4 3,111,353 + +0.7 3,111,353 + -0.2 3,111,353 + -2.9 3,111,366 - +0.7 3,111,410 + PGA1_c29740 0.12 -1.0 3,111,463 + PGA1_c29740 0.26 +1.4 3,111,495 - PGA1_c29740 0.35 -2.3 3,111,504 - PGA1_c29740 0.37 +2.4 3,111,559 + PGA1_c29740 0.52 +0.9 3,111,668 - PGA1_c29740 0.82 -0.0 3,111,690 - PGA1_c29740 0.88 +2.0 3,111,701 + -0.8 3,111,773 + +0.1 3,111,773 + +1.0 3,111,781 - +0.5 3,111,781 - -2.5 3,111,781 - +0.3 3,111,781 - +0.6 3,111,781 - -0.0 3,111,818 + -0.7 3,111,826 - PGA1_c29750 0.11 -2.2 3,111,881 - PGA1_c29750 0.23 -0.7 3,111,927 - PGA1_c29750 0.32 -0.6 3,111,954 - PGA1_c29750 0.38 +0.3 3,111,954 - PGA1_c29750 0.38 +0.5 3,111,954 - PGA1_c29750 0.38 +0.5 3,112,026 + PGA1_c29750 0.53 -1.0 3,112,026 + PGA1_c29750 0.53 -0.4 3,112,039 + PGA1_c29750 0.56 +0.2 3,112,040 - PGA1_c29750 0.56 +1.3 3,112,056 + PGA1_c29750 0.60 +0.9 3,112,069 - PGA1_c29750 0.62 +0.7 3,112,142 - PGA1_c29750 0.78 +0.2 3,112,142 - PGA1_c29750 0.78 +1.2 3,112,142 - PGA1_c29750 0.78 +0.9 3,112,207 + -0.8 3,112,208 + +1.1 3,112,275 + -1.8 3,112,295 - -1.2 3,112,394 - PGA1_c29760 0.17 -2.8 3,112,409 - PGA1_c29760 0.21 -0.1 3,112,414 - PGA1_c29760 0.23 +0.5 3,112,469 + PGA1_c29760 0.38 +0.7 3,112,476 - PGA1_c29760 0.40 -0.5 3,112,561 + PGA1_c29760 0.63 -0.3 3,112,562 + PGA1_c29760 0.63 +0.7 3,112,673 - +0.3
Or see this region's nucleotide sequence