Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29670

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29660 and PGA1_c29670 are separated by 102 nucleotidesPGA1_c29670 and PGA1_c29680 are separated by 133 nucleotidesPGA1_c29680 and PGA1_c29690 overlap by 4 nucleotides PGA1_c29660: PGA1_c29660 - hypothetical protein, at 3,101,828 to 3,104,017 _c29660 PGA1_c29670: PGA1_c29670 - small heat shock protein IbpA, at 3,104,120 to 3,104,578 _c29670 PGA1_c29680: PGA1_c29680 - serine protease-like protein, at 3,104,712 to 3,105,527 _c29680 PGA1_c29690: PGA1_c29690 - serine protease-like protein, at 3,105,524 to 3,106,378 _c29690 Position (kb) 3104 3105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3103.122 kb on - strand, within PGA1_c29660at 3103.132 kb on - strand, within PGA1_c29660at 3103.132 kb on - strand, within PGA1_c29660at 3103.134 kb on + strand, within PGA1_c29660at 3103.139 kb on - strand, within PGA1_c29660at 3103.171 kb on + strand, within PGA1_c29660at 3103.171 kb on + strand, within PGA1_c29660at 3103.179 kb on - strand, within PGA1_c29660at 3103.179 kb on - strand, within PGA1_c29660at 3103.211 kb on + strand, within PGA1_c29660at 3103.222 kb on + strand, within PGA1_c29660at 3103.238 kb on - strand, within PGA1_c29660at 3103.269 kb on + strand, within PGA1_c29660at 3103.291 kb on + strand, within PGA1_c29660at 3103.352 kb on - strand, within PGA1_c29660at 3103.355 kb on - strand, within PGA1_c29660at 3103.369 kb on + strand, within PGA1_c29660at 3103.380 kb on + strand, within PGA1_c29660at 3103.388 kb on - strand, within PGA1_c29660at 3103.388 kb on - strand, within PGA1_c29660at 3103.403 kb on + strand, within PGA1_c29660at 3103.444 kb on + strand, within PGA1_c29660at 3103.596 kb on - strand, within PGA1_c29660at 3103.650 kb on - strand, within PGA1_c29660at 3103.667 kb on - strand, within PGA1_c29660at 3103.746 kb on - strand, within PGA1_c29660at 3103.759 kb on + strand, within PGA1_c29660at 3103.783 kb on + strand, within PGA1_c29660at 3103.796 kb on - strand, within PGA1_c29660at 3103.796 kb on - strand, within PGA1_c29660at 3103.889 kb on + strandat 3103.924 kb on + strandat 3103.943 kb on + strandat 3103.988 kb on + strandat 3104.021 kb on + strandat 3104.021 kb on + strandat 3104.130 kb on + strandat 3104.247 kb on - strand, within PGA1_c29670at 3104.320 kb on - strand, within PGA1_c29670at 3104.331 kb on - strand, within PGA1_c29670at 3104.520 kb on + strand, within PGA1_c29670at 3104.549 kb on + strandat 3104.557 kb on - strandat 3104.639 kb on - strandat 3104.641 kb on + strandat 3104.641 kb on + strandat 3104.692 kb on - strandat 3104.839 kb on - strand, within PGA1_c29680at 3104.870 kb on + strand, within PGA1_c29680at 3104.878 kb on - strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.880 kb on + strand, within PGA1_c29680at 3104.883 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.888 kb on - strand, within PGA1_c29680at 3104.901 kb on - strand, within PGA1_c29680at 3104.993 kb on - strand, within PGA1_c29680at 3105.038 kb on + strand, within PGA1_c29680at 3105.131 kb on + strand, within PGA1_c29680at 3105.153 kb on - strand, within PGA1_c29680at 3105.223 kb on - strand, within PGA1_c29680at 3105.232 kb on + strand, within PGA1_c29680at 3105.233 kb on - strand, within PGA1_c29680at 3105.261 kb on + strand, within PGA1_c29680at 3105.269 kb on - strand, within PGA1_c29680at 3105.274 kb on - strand, within PGA1_c29680at 3105.287 kb on + strand, within PGA1_c29680at 3105.292 kb on + strand, within PGA1_c29680at 3105.304 kb on + strand, within PGA1_c29680at 3105.400 kb on - strand, within PGA1_c29680at 3105.417 kb on + strand, within PGA1_c29680at 3105.419 kb on + strand, within PGA1_c29680at 3105.461 kb on + strandat 3105.478 kb on + strandat 3105.502 kb on + strandat 3105.506 kb on + strandat 3105.506 kb on + strandat 3105.510 kb on - strandat 3105.514 kb on - strandat 3105.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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3,103,122 - PGA1_c29660 0.59 +0.5
3,103,132 - PGA1_c29660 0.60 -0.1
3,103,132 - PGA1_c29660 0.60 -0.1
3,103,134 + PGA1_c29660 0.60 +0.3
3,103,139 - PGA1_c29660 0.60 +0.5
3,103,171 + PGA1_c29660 0.61 +0.5
3,103,171 + PGA1_c29660 0.61 -0.6
3,103,179 - PGA1_c29660 0.62 +0.2
3,103,179 - PGA1_c29660 0.62 -0.0
3,103,211 + PGA1_c29660 0.63 -1.2
3,103,222 + PGA1_c29660 0.64 -0.2
3,103,238 - PGA1_c29660 0.64 +0.4
3,103,269 + PGA1_c29660 0.66 +0.5
3,103,291 + PGA1_c29660 0.67 +0.0
3,103,352 - PGA1_c29660 0.70 -0.2
3,103,355 - PGA1_c29660 0.70 +0.3
3,103,369 + PGA1_c29660 0.70 +0.0
3,103,380 + PGA1_c29660 0.71 +0.2
3,103,388 - PGA1_c29660 0.71 +0.5
3,103,388 - PGA1_c29660 0.71 +2.9
3,103,403 + PGA1_c29660 0.72 -0.3
3,103,444 + PGA1_c29660 0.74 +0.7
3,103,596 - PGA1_c29660 0.81 -1.4
3,103,650 - PGA1_c29660 0.83 +0.3
3,103,667 - PGA1_c29660 0.84 +0.4
3,103,746 - PGA1_c29660 0.88 -0.5
3,103,759 + PGA1_c29660 0.88 +0.2
3,103,783 + PGA1_c29660 0.89 -0.6
3,103,796 - PGA1_c29660 0.90 +0.3
3,103,796 - PGA1_c29660 0.90 -3.3
3,103,889 + -0.3
3,103,924 + -1.8
3,103,943 + +1.1
3,103,988 + -0.5
3,104,021 + +0.1
3,104,021 + -2.5
3,104,130 + +1.5
3,104,247 - PGA1_c29670 0.28 +0.7
3,104,320 - PGA1_c29670 0.44 +0.7
3,104,331 - PGA1_c29670 0.46 -0.1
3,104,520 + PGA1_c29670 0.87 -0.0
3,104,549 + +0.9
3,104,557 - -0.5
3,104,639 - -1.0
3,104,641 + -1.3
3,104,641 + -0.2
3,104,692 - -0.1
3,104,839 - PGA1_c29680 0.16 +0.7
3,104,870 + PGA1_c29680 0.19 +0.6
3,104,878 - PGA1_c29680 0.20 -0.9
3,104,880 + PGA1_c29680 0.21 -0.0
3,104,880 + PGA1_c29680 0.21 -1.5
3,104,880 + PGA1_c29680 0.21 -0.5
3,104,883 - PGA1_c29680 0.21 -2.0
3,104,888 - PGA1_c29680 0.22 -1.1
3,104,888 - PGA1_c29680 0.22 -0.6
3,104,888 - PGA1_c29680 0.22 +0.5
3,104,901 - PGA1_c29680 0.23 +1.0
3,104,993 - PGA1_c29680 0.34 -0.4
3,105,038 + PGA1_c29680 0.40 -1.9
3,105,131 + PGA1_c29680 0.51 +0.5
3,105,153 - PGA1_c29680 0.54 +0.7
3,105,223 - PGA1_c29680 0.63 +0.8
3,105,232 + PGA1_c29680 0.64 +0.7
3,105,233 - PGA1_c29680 0.64 -0.5
3,105,261 + PGA1_c29680 0.67 +1.3
3,105,269 - PGA1_c29680 0.68 -0.8
3,105,274 - PGA1_c29680 0.69 +0.5
3,105,287 + PGA1_c29680 0.70 -1.0
3,105,292 + PGA1_c29680 0.71 -0.3
3,105,304 + PGA1_c29680 0.73 -0.2
3,105,400 - PGA1_c29680 0.84 +0.5
3,105,417 + PGA1_c29680 0.86 -1.2
3,105,419 + PGA1_c29680 0.87 -1.5
3,105,461 + +0.2
3,105,478 + -2.5
3,105,502 + +1.1
3,105,506 + +0.5
3,105,506 + -0.5
3,105,510 - +0.8
3,105,514 - +0.5
3,105,538 + +0.2

Or see this region's nucleotide sequence