Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28070 and PGA1_c28080 are separated by 9 nucleotides PGA1_c28080 and PGA1_c28090 are separated by 99 nucleotides PGA1_c28090 and PGA1_c28100 are separated by 381 nucleotides
PGA1_c28070: PGA1_c28070 - putative transcriptional regulator, marR family, at 2,927,633 to 2,928,835
_c28070
PGA1_c28080: PGA1_c28080 - putative acetyltransferase, GNAT family, at 2,928,845 to 2,929,375
_c28080
PGA1_c28090: PGA1_c28090 - DNA polymerase III subunit alpha, at 2,929,475 to 2,932,987
_c28090
PGA1_c28100: PGA1_c28100 - xanthine dehydrogenase XdhA, at 2,933,369 to 2,934,814
_c28100
Position (kb)
2929
2930
2931
2932
2933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2928.551 kb on - strand, within PGA1_c28070 at 2928.553 kb on + strand, within PGA1_c28070 at 2928.662 kb on - strand, within PGA1_c28070 at 2928.688 kb on + strand, within PGA1_c28070 at 2928.702 kb on + strand, within PGA1_c28070 at 2928.702 kb on + strand, within PGA1_c28070 at 2928.702 kb on + strand, within PGA1_c28070 at 2928.708 kb on + strand, within PGA1_c28070 at 2928.710 kb on - strand, within PGA1_c28070 at 2928.710 kb on - strand, within PGA1_c28070 at 2928.710 kb on - strand, within PGA1_c28070 at 2928.848 kb on + strand at 2928.879 kb on + strand at 2928.921 kb on + strand, within PGA1_c28080 at 2929.016 kb on + strand, within PGA1_c28080 at 2929.024 kb on - strand, within PGA1_c28080 at 2929.024 kb on - strand, within PGA1_c28080 at 2929.031 kb on + strand, within PGA1_c28080 at 2929.057 kb on - strand, within PGA1_c28080 at 2929.096 kb on + strand, within PGA1_c28080 at 2929.104 kb on - strand, within PGA1_c28080 at 2929.106 kb on + strand, within PGA1_c28080 at 2929.106 kb on + strand, within PGA1_c28080 at 2929.106 kb on + strand, within PGA1_c28080 at 2929.106 kb on + strand, within PGA1_c28080 at 2929.106 kb on + strand, within PGA1_c28080 at 2929.114 kb on - strand, within PGA1_c28080 at 2929.114 kb on - strand, within PGA1_c28080 at 2929.114 kb on - strand, within PGA1_c28080 at 2929.122 kb on + strand, within PGA1_c28080 at 2929.125 kb on - strand, within PGA1_c28080 at 2929.125 kb on - strand, within PGA1_c28080 at 2929.127 kb on + strand, within PGA1_c28080 at 2929.149 kb on - strand, within PGA1_c28080 at 2929.150 kb on + strand, within PGA1_c28080 at 2929.279 kb on + strand, within PGA1_c28080 at 2929.279 kb on + strand, within PGA1_c28080 at 2929.290 kb on + strand, within PGA1_c28080 at 2929.298 kb on - strand, within PGA1_c28080 at 2929.325 kb on - strand at 2929.365 kb on - strand at 2929.424 kb on + strand at 2933.024 kb on - strand at 2933.057 kb on + strand at 2933.186 kb on - strand at 2933.201 kb on - strand at 2933.217 kb on - strand at 2933.222 kb on + strand at 2933.230 kb on - strand at 2933.255 kb on - strand at 2933.283 kb on + strand at 2933.291 kb on - strand at 2933.303 kb on + strand at 2933.316 kb on + strand at 2933.316 kb on + strand at 2933.316 kb on + strand at 2933.324 kb on + strand at 2933.387 kb on - strand at 2933.387 kb on - strand at 2933.401 kb on + strand at 2933.402 kb on - strand at 2933.409 kb on - strand at 2933.414 kb on - strand at 2933.418 kb on - strand at 2933.450 kb on + strand at 2933.663 kb on + strand, within PGA1_c28100 at 2933.669 kb on - strand, within PGA1_c28100 at 2933.690 kb on + strand, within PGA1_c28100 at 2933.713 kb on + strand, within PGA1_c28100 at 2933.723 kb on + strand, within PGA1_c28100 at 2933.748 kb on - strand, within PGA1_c28100 at 2933.815 kb on - strand, within PGA1_c28100 at 2933.918 kb on + strand, within PGA1_c28100 at 2933.918 kb on + strand, within PGA1_c28100 at 2933.936 kb on - strand, within PGA1_c28100 at 2933.980 kb on + strand, within PGA1_c28100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 2,928,551 - PGA1_c28070 0.76 -0.4 2,928,553 + PGA1_c28070 0.76 -0.0 2,928,662 - PGA1_c28070 0.86 +0.1 2,928,688 + PGA1_c28070 0.88 +0.2 2,928,702 + PGA1_c28070 0.89 +0.4 2,928,702 + PGA1_c28070 0.89 +1.8 2,928,702 + PGA1_c28070 0.89 -0.1 2,928,708 + PGA1_c28070 0.89 -0.8 2,928,710 - PGA1_c28070 0.90 -2.3 2,928,710 - PGA1_c28070 0.90 -0.4 2,928,710 - PGA1_c28070 0.90 +0.1 2,928,848 + +0.4 2,928,879 + -0.3 2,928,921 + PGA1_c28080 0.14 -0.7 2,929,016 + PGA1_c28080 0.32 +1.0 2,929,024 - PGA1_c28080 0.34 -0.2 2,929,024 - PGA1_c28080 0.34 -0.7 2,929,031 + PGA1_c28080 0.35 -0.0 2,929,057 - PGA1_c28080 0.40 +0.4 2,929,096 + PGA1_c28080 0.47 +0.2 2,929,104 - PGA1_c28080 0.49 +1.4 2,929,106 + PGA1_c28080 0.49 +0.3 2,929,106 + PGA1_c28080 0.49 -1.0 2,929,106 + PGA1_c28080 0.49 +0.1 2,929,106 + PGA1_c28080 0.49 -0.7 2,929,106 + PGA1_c28080 0.49 +0.5 2,929,114 - PGA1_c28080 0.51 +0.9 2,929,114 - PGA1_c28080 0.51 +1.1 2,929,114 - PGA1_c28080 0.51 -1.3 2,929,122 + PGA1_c28080 0.52 +1.0 2,929,125 - PGA1_c28080 0.53 -2.3 2,929,125 - PGA1_c28080 0.53 -0.7 2,929,127 + PGA1_c28080 0.53 +1.1 2,929,149 - PGA1_c28080 0.57 -0.7 2,929,150 + PGA1_c28080 0.57 -1.7 2,929,279 + PGA1_c28080 0.82 +0.3 2,929,279 + PGA1_c28080 0.82 -0.3 2,929,290 + PGA1_c28080 0.84 -1.6 2,929,298 - PGA1_c28080 0.85 -0.8 2,929,325 - +0.3 2,929,365 - -0.3 2,929,424 + +0.4 2,933,024 - +1.0 2,933,057 + +1.8 2,933,186 - +0.3 2,933,201 - -1.0 2,933,217 - +1.9 2,933,222 + +1.6 2,933,230 - +1.6 2,933,255 - -0.4 2,933,283 + +1.6 2,933,291 - +0.4 2,933,303 + -0.1 2,933,316 + -1.1 2,933,316 + -0.9 2,933,316 + +0.0 2,933,324 + -1.6 2,933,387 - -0.4 2,933,387 - -0.4 2,933,401 + -0.4 2,933,402 - -0.2 2,933,409 - +0.4 2,933,414 - -2.6 2,933,418 - -0.1 2,933,450 + +0.4 2,933,663 + PGA1_c28100 0.20 -1.0 2,933,669 - PGA1_c28100 0.21 -1.8 2,933,690 + PGA1_c28100 0.22 -1.1 2,933,713 + PGA1_c28100 0.24 +2.6 2,933,723 + PGA1_c28100 0.24 -0.7 2,933,748 - PGA1_c28100 0.26 -0.3 2,933,815 - PGA1_c28100 0.31 +0.7 2,933,918 + PGA1_c28100 0.38 -0.3 2,933,918 + PGA1_c28100 0.38 -0.8 2,933,936 - PGA1_c28100 0.39 +0.6 2,933,980 + PGA1_c28100 0.42 +1.7
Or see this region's nucleotide sequence