Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27840

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27820 and PGA1_c27830 overlap by 1 nucleotidesPGA1_c27830 and PGA1_c27840 are separated by 16 nucleotidesPGA1_c27840 and PGA1_c27850 overlap by 4 nucleotides PGA1_c27820: PGA1_c27820 - hypothetical protein, at 2,898,147 to 2,899,607 _c27820 PGA1_c27830: PGA1_c27830 - hypothetical protein, at 2,899,607 to 2,900,392 _c27830 PGA1_c27840: PGA1_c27840 - putative polysaccharide biosynthesis protein, at 2,900,409 to 2,900,810 _c27840 PGA1_c27850: PGA1_c27850 - glycosyltransferase, at 2,900,807 to 2,901,811 _c27850 Position (kb) 2900 2901Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2899.455 kb on - strand, within PGA1_c27820at 2899.580 kb on + strandat 2899.588 kb on - strandat 2899.588 kb on - strandat 2899.600 kb on + strandat 2899.631 kb on - strandat 2899.637 kb on + strandat 2899.640 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.650 kb on + strandat 2899.690 kb on - strand, within PGA1_c27830at 2899.702 kb on + strand, within PGA1_c27830at 2899.755 kb on - strand, within PGA1_c27830at 2899.771 kb on + strand, within PGA1_c27830at 2899.816 kb on + strand, within PGA1_c27830at 2899.824 kb on - strand, within PGA1_c27830at 2899.996 kb on - strand, within PGA1_c27830at 2900.067 kb on + strand, within PGA1_c27830at 2900.089 kb on + strand, within PGA1_c27830at 2900.089 kb on + strand, within PGA1_c27830at 2900.097 kb on - strand, within PGA1_c27830at 2900.097 kb on - strand, within PGA1_c27830at 2900.133 kb on + strand, within PGA1_c27830at 2900.141 kb on - strand, within PGA1_c27830at 2900.221 kb on + strand, within PGA1_c27830at 2900.232 kb on + strand, within PGA1_c27830at 2900.232 kb on + strand, within PGA1_c27830at 2900.235 kb on - strand, within PGA1_c27830at 2900.270 kb on + strand, within PGA1_c27830at 2900.296 kb on - strand, within PGA1_c27830at 2900.327 kb on - strandat 2900.358 kb on - strandat 2900.462 kb on - strand, within PGA1_c27840at 2900.462 kb on - strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.540 kb on + strand, within PGA1_c27840at 2900.608 kb on - strand, within PGA1_c27840at 2900.619 kb on + strand, within PGA1_c27840at 2900.619 kb on + strand, within PGA1_c27840at 2900.619 kb on + strand, within PGA1_c27840at 2900.627 kb on - strand, within PGA1_c27840at 2900.627 kb on - strand, within PGA1_c27840at 2900.628 kb on - strand, within PGA1_c27840at 2900.641 kb on - strand, within PGA1_c27840at 2900.690 kb on + strand, within PGA1_c27840at 2900.705 kb on + strand, within PGA1_c27840at 2900.778 kb on + strandat 2900.786 kb on - strandat 2900.787 kb on + strandat 2900.795 kb on - strandat 2900.894 kb on - strandat 2900.894 kb on - strandat 2900.943 kb on + strand, within PGA1_c27850at 2900.951 kb on - strand, within PGA1_c27850at 2901.042 kb on + strand, within PGA1_c27850at 2901.043 kb on - strand, within PGA1_c27850at 2901.045 kb on + strand, within PGA1_c27850at 2901.105 kb on - strand, within PGA1_c27850at 2901.112 kb on - strand, within PGA1_c27850at 2901.118 kb on + strand, within PGA1_c27850at 2901.176 kb on + strand, within PGA1_c27850at 2901.230 kb on + strand, within PGA1_c27850at 2901.230 kb on + strand, within PGA1_c27850at 2901.238 kb on - strand, within PGA1_c27850at 2901.383 kb on - strand, within PGA1_c27850at 2901.411 kb on + strand, within PGA1_c27850at 2901.419 kb on - strand, within PGA1_c27850at 2901.430 kb on + strand, within PGA1_c27850at 2901.438 kb on - strand, within PGA1_c27850at 2901.439 kb on - strand, within PGA1_c27850at 2901.464 kb on + strand, within PGA1_c27850at 2901.586 kb on + strand, within PGA1_c27850at 2901.656 kb on + strand, within PGA1_c27850at 2901.656 kb on + strand, within PGA1_c27850at 2901.656 kb on + strand, within PGA1_c27850at 2901.664 kb on - strand, within PGA1_c27850at 2901.671 kb on + strand, within PGA1_c27850at 2901.671 kb on + strand, within PGA1_c27850at 2901.674 kb on - strand, within PGA1_c27850at 2901.690 kb on + strand, within PGA1_c27850at 2901.725 kb on + strandat 2901.770 kb on - strandat 2901.772 kb on + strandat 2901.788 kb on + strandat 2901.788 kb on + strandat 2901.788 kb on + strandat 2901.788 kb on + strandat 2901.788 kb on + strandat 2901.796 kb on - strandat 2901.796 kb on - strandat 2901.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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2,899,455 - PGA1_c27820 0.90 -0.1
2,899,580 + +0.1
2,899,588 - -0.2
2,899,588 - -0.8
2,899,600 + -0.4
2,899,631 - -0.3
2,899,637 + +0.8
2,899,640 - -0.0
2,899,645 - -0.8
2,899,645 - +0.8
2,899,645 - -1.5
2,899,645 - -0.4
2,899,650 + +0.2
2,899,690 - PGA1_c27830 0.11 -0.4
2,899,702 + PGA1_c27830 0.12 +0.9
2,899,755 - PGA1_c27830 0.19 +1.1
2,899,771 + PGA1_c27830 0.21 -1.4
2,899,816 + PGA1_c27830 0.27 -0.6
2,899,824 - PGA1_c27830 0.28 +0.3
2,899,996 - PGA1_c27830 0.49 -1.5
2,900,067 + PGA1_c27830 0.59 +0.3
2,900,089 + PGA1_c27830 0.61 +0.0
2,900,089 + PGA1_c27830 0.61 +0.1
2,900,097 - PGA1_c27830 0.62 -0.3
2,900,097 - PGA1_c27830 0.62 -0.5
2,900,133 + PGA1_c27830 0.67 -1.8
2,900,141 - PGA1_c27830 0.68 -0.3
2,900,221 + PGA1_c27830 0.78 -0.7
2,900,232 + PGA1_c27830 0.80 +1.0
2,900,232 + PGA1_c27830 0.80 -0.1
2,900,235 - PGA1_c27830 0.80 -0.9
2,900,270 + PGA1_c27830 0.84 +0.4
2,900,296 - PGA1_c27830 0.88 +0.4
2,900,327 - +1.1
2,900,358 - -0.5
2,900,462 - PGA1_c27840 0.13 +0.9
2,900,462 - PGA1_c27840 0.13 +0.8
2,900,508 + PGA1_c27840 0.25 -0.5
2,900,508 + PGA1_c27840 0.25 +0.5
2,900,508 + PGA1_c27840 0.25 +0.1
2,900,540 + PGA1_c27840 0.33 +1.8
2,900,608 - PGA1_c27840 0.50 -0.1
2,900,619 + PGA1_c27840 0.52 +0.4
2,900,619 + PGA1_c27840 0.52 -1.5
2,900,619 + PGA1_c27840 0.52 +0.7
2,900,627 - PGA1_c27840 0.54 -0.1
2,900,627 - PGA1_c27840 0.54 +1.2
2,900,628 - PGA1_c27840 0.54 -0.1
2,900,641 - PGA1_c27840 0.58 -0.2
2,900,690 + PGA1_c27840 0.70 +0.6
2,900,705 + PGA1_c27840 0.74 +0.2
2,900,778 + +1.4
2,900,786 - +1.4
2,900,787 + +1.5
2,900,795 - +1.0
2,900,894 - +2.5
2,900,894 - -1.9
2,900,943 + PGA1_c27850 0.14 +2.9
2,900,951 - PGA1_c27850 0.14 -0.5
2,901,042 + PGA1_c27850 0.23 -0.1
2,901,043 - PGA1_c27850 0.23 -0.0
2,901,045 + PGA1_c27850 0.24 +0.1
2,901,105 - PGA1_c27850 0.30 +1.4
2,901,112 - PGA1_c27850 0.30 -1.4
2,901,118 + PGA1_c27850 0.31 +0.6
2,901,176 + PGA1_c27850 0.37 +0.4
2,901,230 + PGA1_c27850 0.42 +0.2
2,901,230 + PGA1_c27850 0.42 +0.1
2,901,238 - PGA1_c27850 0.43 -1.1
2,901,383 - PGA1_c27850 0.57 +0.6
2,901,411 + PGA1_c27850 0.60 -2.8
2,901,419 - PGA1_c27850 0.61 +0.6
2,901,430 + PGA1_c27850 0.62 -1.4
2,901,438 - PGA1_c27850 0.63 -0.1
2,901,439 - PGA1_c27850 0.63 +0.5
2,901,464 + PGA1_c27850 0.65 +0.4
2,901,586 + PGA1_c27850 0.78 -0.9
2,901,656 + PGA1_c27850 0.84 +1.2
2,901,656 + PGA1_c27850 0.84 -0.2
2,901,656 + PGA1_c27850 0.84 +0.3
2,901,664 - PGA1_c27850 0.85 +1.6
2,901,671 + PGA1_c27850 0.86 -0.4
2,901,671 + PGA1_c27850 0.86 -0.4
2,901,674 - PGA1_c27850 0.86 +0.4
2,901,690 + PGA1_c27850 0.88 -0.2
2,901,725 + +0.9
2,901,770 - +2.0
2,901,772 + -0.1
2,901,788 + +0.6
2,901,788 + +1.0
2,901,788 + +0.1
2,901,788 + +0.1
2,901,788 + +0.6
2,901,796 - -0.4
2,901,796 - -0.8
2,901,796 - +1.1

Or see this region's nucleotide sequence