Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23720 and PGA1_c23730 are separated by 152 nucleotides PGA1_c23730 and PGA1_c23740 are separated by 79 nucleotides PGA1_c23740 and PGA1_c23750 are separated by 76 nucleotides
PGA1_c23720: PGA1_c23720 - glutathione reductase Gor, at 2,475,476 to 2,476,831
_c23720
PGA1_c23730: PGA1_c23730 - hypothetical protein, at 2,476,984 to 2,477,454
_c23730
PGA1_c23740: PGA1_c23740 - ribose-5-phosphate isomerase A, at 2,477,534 to 2,478,322
_c23740
PGA1_c23750: PGA1_c23750 - Uncharacterized conserved protein, at 2,478,399 to 2,478,710
_c23750
Position (kb)
2476
2477
2478 Strain fitness (log2 ratio)
-2
-1
0
1 at 2476.015 kb on + strand, within PGA1_c23720 at 2476.261 kb on + strand, within PGA1_c23720 at 2476.498 kb on + strand, within PGA1_c23720 at 2476.631 kb on - strand, within PGA1_c23720 at 2476.862 kb on + strand at 2476.862 kb on + strand at 2476.862 kb on + strand at 2476.862 kb on + strand at 2476.862 kb on + strand at 2476.862 kb on + strand at 2476.867 kb on + strand at 2476.870 kb on - strand at 2476.870 kb on - strand at 2476.870 kb on - strand at 2476.872 kb on + strand at 2476.880 kb on - strand at 2476.997 kb on - strand at 2477.000 kb on + strand at 2477.000 kb on + strand at 2477.000 kb on + strand at 2477.002 kb on - strand at 2477.008 kb on - strand at 2477.010 kb on + strand at 2477.010 kb on + strand at 2477.018 kb on - strand at 2477.217 kb on - strand, within PGA1_c23730 at 2477.217 kb on - strand, within PGA1_c23730 at 2477.217 kb on - strand, within PGA1_c23730 at 2477.298 kb on + strand, within PGA1_c23730 at 2477.298 kb on + strand, within PGA1_c23730 at 2477.306 kb on - strand, within PGA1_c23730 at 2477.335 kb on + strand, within PGA1_c23730 at 2477.487 kb on - strand at 2477.512 kb on + strand at 2477.512 kb on + strand at 2477.512 kb on + strand at 2477.512 kb on + strand at 2477.520 kb on - strand at 2477.520 kb on - strand at 2477.520 kb on - strand at 2477.540 kb on + strand at 2477.548 kb on - strand at 2477.596 kb on - strand at 2477.597 kb on - strand at 2477.613 kb on - strand, within PGA1_c23740 at 2477.620 kb on + strand, within PGA1_c23740 at 2477.655 kb on - strand, within PGA1_c23740 at 2477.691 kb on + strand, within PGA1_c23740 at 2477.786 kb on - strand, within PGA1_c23740 at 2477.854 kb on + strand, within PGA1_c23740 at 2477.934 kb on + strand, within PGA1_c23740 at 2477.942 kb on - strand, within PGA1_c23740 at 2477.974 kb on - strand, within PGA1_c23740 at 2478.015 kb on + strand, within PGA1_c23740 at 2478.015 kb on + strand, within PGA1_c23740 at 2478.015 kb on + strand, within PGA1_c23740 at 2478.015 kb on + strand, within PGA1_c23740 at 2478.023 kb on - strand, within PGA1_c23740 at 2478.067 kb on + strand, within PGA1_c23740 at 2478.070 kb on - strand, within PGA1_c23740 at 2478.070 kb on - strand, within PGA1_c23740 at 2478.093 kb on - strand, within PGA1_c23740 at 2478.119 kb on + strand, within PGA1_c23740 at 2478.153 kb on + strand, within PGA1_c23740 at 2478.211 kb on + strand, within PGA1_c23740 at 2478.225 kb on + strand, within PGA1_c23740 at 2478.227 kb on + strand, within PGA1_c23740 at 2478.278 kb on - strand at 2478.305 kb on + strand at 2478.325 kb on - strand at 2478.362 kb on + strand at 2478.391 kb on - strand at 2478.430 kb on - strand at 2478.454 kb on + strand, within PGA1_c23750 at 2478.454 kb on + strand, within PGA1_c23750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 2,476,015 + PGA1_c23720 0.40 -2.6 2,476,261 + PGA1_c23720 0.58 +0.5 2,476,498 + PGA1_c23720 0.75 +0.5 2,476,631 - PGA1_c23720 0.85 -1.0 2,476,862 + +0.4 2,476,862 + +0.2 2,476,862 + +1.5 2,476,862 + -0.8 2,476,862 + +0.5 2,476,862 + -2.1 2,476,867 + -1.2 2,476,870 - +0.5 2,476,870 - -0.7 2,476,870 - -0.9 2,476,872 + +1.3 2,476,880 - +0.2 2,476,997 - +1.4 2,477,000 + +1.4 2,477,000 + -0.3 2,477,000 + -0.4 2,477,002 - +1.6 2,477,008 - -0.1 2,477,010 + -0.5 2,477,010 + -1.3 2,477,018 - +0.1 2,477,217 - PGA1_c23730 0.49 -1.8 2,477,217 - PGA1_c23730 0.49 +0.7 2,477,217 - PGA1_c23730 0.49 +1.0 2,477,298 + PGA1_c23730 0.67 +0.8 2,477,298 + PGA1_c23730 0.67 +1.0 2,477,306 - PGA1_c23730 0.68 -2.1 2,477,335 + PGA1_c23730 0.75 +1.5 2,477,487 - +0.3 2,477,512 + +0.5 2,477,512 + -1.0 2,477,512 + -1.5 2,477,512 + -1.0 2,477,520 - +0.6 2,477,520 - -0.3 2,477,520 - -0.8 2,477,540 + -0.9 2,477,548 - -0.5 2,477,596 - -0.2 2,477,597 - +0.1 2,477,613 - PGA1_c23740 0.10 -0.3 2,477,620 + PGA1_c23740 0.11 +1.3 2,477,655 - PGA1_c23740 0.15 +0.4 2,477,691 + PGA1_c23740 0.20 +1.0 2,477,786 - PGA1_c23740 0.32 -0.6 2,477,854 + PGA1_c23740 0.41 +0.5 2,477,934 + PGA1_c23740 0.51 -1.5 2,477,942 - PGA1_c23740 0.52 -0.4 2,477,974 - PGA1_c23740 0.56 -1.5 2,478,015 + PGA1_c23740 0.61 -0.3 2,478,015 + PGA1_c23740 0.61 +0.5 2,478,015 + PGA1_c23740 0.61 +0.0 2,478,015 + PGA1_c23740 0.61 +0.5 2,478,023 - PGA1_c23740 0.62 -0.1 2,478,067 + PGA1_c23740 0.68 -0.3 2,478,070 - PGA1_c23740 0.68 -0.7 2,478,070 - PGA1_c23740 0.68 -1.2 2,478,093 - PGA1_c23740 0.71 -0.4 2,478,119 + PGA1_c23740 0.74 +0.2 2,478,153 + PGA1_c23740 0.78 -0.2 2,478,211 + PGA1_c23740 0.86 -2.0 2,478,225 + PGA1_c23740 0.88 -0.5 2,478,227 + PGA1_c23740 0.88 +0.2 2,478,278 - -0.2 2,478,305 + +0.2 2,478,325 - -0.4 2,478,362 + -0.0 2,478,391 - -1.4 2,478,430 - -1.0 2,478,454 + PGA1_c23750 0.18 -0.8 2,478,454 + PGA1_c23750 0.18 -0.9
Or see this region's nucleotide sequence