Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19970 and PGA1_c19980 are separated by 8 nucleotides PGA1_c19980 and PGA1_c19990 are separated by 21 nucleotides
PGA1_c19970: PGA1_c19970 - luciferase family oxidoreductase, group 1, at 2,071,674 to 2,072,669
_c19970
PGA1_c19980: PGA1_c19980 - hypothetical protein, at 2,072,678 to 2,073,220
_c19980
PGA1_c19990: PGA1_c19990 - ribosomal RNA large subunit methyltransferase I, at 2,073,242 to 2,074,456
_c19990
Position (kb)
2072
2073
2074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2071.684 kb on - strand at 2071.686 kb on + strand at 2071.686 kb on + strand at 2071.689 kb on - strand at 2071.694 kb on - strand at 2071.721 kb on - strand at 2071.750 kb on + strand at 2071.776 kb on + strand, within PGA1_c19970 at 2071.803 kb on + strand, within PGA1_c19970 at 2071.871 kb on - strand, within PGA1_c19970 at 2071.907 kb on + strand, within PGA1_c19970 at 2071.920 kb on + strand, within PGA1_c19970 at 2071.922 kb on + strand, within PGA1_c19970 at 2071.928 kb on - strand, within PGA1_c19970 at 2071.945 kb on - strand, within PGA1_c19970 at 2071.977 kb on + strand, within PGA1_c19970 at 2072.027 kb on - strand, within PGA1_c19970 at 2072.138 kb on - strand, within PGA1_c19970 at 2072.153 kb on - strand, within PGA1_c19970 at 2072.155 kb on + strand, within PGA1_c19970 at 2072.189 kb on + strand, within PGA1_c19970 at 2072.222 kb on + strand, within PGA1_c19970 at 2072.222 kb on + strand, within PGA1_c19970 at 2072.222 kb on + strand, within PGA1_c19970 at 2072.222 kb on + strand, within PGA1_c19970 at 2072.230 kb on - strand, within PGA1_c19970 at 2072.230 kb on - strand, within PGA1_c19970 at 2072.291 kb on + strand, within PGA1_c19970 at 2072.309 kb on + strand, within PGA1_c19970 at 2072.408 kb on - strand, within PGA1_c19970 at 2072.583 kb on - strand at 2072.598 kb on + strand at 2072.598 kb on + strand at 2072.619 kb on + strand at 2072.624 kb on + strand at 2072.624 kb on + strand at 2072.627 kb on - strand at 2072.632 kb on - strand at 2072.632 kb on - strand at 2072.692 kb on - strand at 2072.699 kb on - strand at 2072.737 kb on + strand, within PGA1_c19980 at 2072.737 kb on + strand, within PGA1_c19980 at 2072.745 kb on - strand, within PGA1_c19980 at 2072.745 kb on - strand, within PGA1_c19980 at 2072.784 kb on + strand, within PGA1_c19980 at 2072.812 kb on - strand, within PGA1_c19980 at 2072.981 kb on - strand, within PGA1_c19980 at 2072.986 kb on + strand, within PGA1_c19980 at 2073.038 kb on - strand, within PGA1_c19980 at 2073.064 kb on - strand, within PGA1_c19980 at 2073.243 kb on - strand at 2073.248 kb on - strand at 2073.329 kb on - strand at 2073.463 kb on + strand, within PGA1_c19990 at 2073.517 kb on + strand, within PGA1_c19990 at 2073.525 kb on - strand, within PGA1_c19990 at 2073.577 kb on - strand, within PGA1_c19990 at 2073.586 kb on + strand, within PGA1_c19990 at 2073.594 kb on - strand, within PGA1_c19990 at 2073.594 kb on - strand, within PGA1_c19990 at 2073.732 kb on - strand, within PGA1_c19990 at 2073.760 kb on + strand, within PGA1_c19990 at 2073.802 kb on - strand, within PGA1_c19990 at 2073.913 kb on + strand, within PGA1_c19990 at 2073.918 kb on + strand, within PGA1_c19990 at 2073.937 kb on + strand, within PGA1_c19990 at 2073.945 kb on - strand, within PGA1_c19990 at 2073.985 kb on - strand, within PGA1_c19990 at 2074.001 kb on - strand, within PGA1_c19990 at 2074.010 kb on + strand, within PGA1_c19990 at 2074.044 kb on + strand, within PGA1_c19990 at 2074.044 kb on + strand, within PGA1_c19990 at 2074.044 kb on + strand, within PGA1_c19990 at 2074.049 kb on + strand, within PGA1_c19990 at 2074.052 kb on - strand, within PGA1_c19990 at 2074.062 kb on - strand, within PGA1_c19990 at 2074.123 kb on + strand, within PGA1_c19990 at 2074.140 kb on + strand, within PGA1_c19990 at 2074.148 kb on - strand, within PGA1_c19990 at 2074.172 kb on + strand, within PGA1_c19990 at 2074.185 kb on - strand, within PGA1_c19990 at 2074.196 kb on - strand, within PGA1_c19990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 2,071,684 - -0.5 2,071,686 + +1.3 2,071,686 + -0.7 2,071,689 - -0.7 2,071,694 - +2.1 2,071,721 - -0.5 2,071,750 + -1.0 2,071,776 + PGA1_c19970 0.10 +0.1 2,071,803 + PGA1_c19970 0.13 +0.4 2,071,871 - PGA1_c19970 0.20 +0.7 2,071,907 + PGA1_c19970 0.23 -0.7 2,071,920 + PGA1_c19970 0.25 -0.3 2,071,922 + PGA1_c19970 0.25 -0.1 2,071,928 - PGA1_c19970 0.26 +0.2 2,071,945 - PGA1_c19970 0.27 -0.0 2,071,977 + PGA1_c19970 0.30 -1.0 2,072,027 - PGA1_c19970 0.35 +1.4 2,072,138 - PGA1_c19970 0.47 -0.2 2,072,153 - PGA1_c19970 0.48 -0.9 2,072,155 + PGA1_c19970 0.48 -2.8 2,072,189 + PGA1_c19970 0.52 -0.2 2,072,222 + PGA1_c19970 0.55 -0.4 2,072,222 + PGA1_c19970 0.55 -0.1 2,072,222 + PGA1_c19970 0.55 +0.1 2,072,222 + PGA1_c19970 0.55 -0.9 2,072,230 - PGA1_c19970 0.56 +1.1 2,072,230 - PGA1_c19970 0.56 -0.7 2,072,291 + PGA1_c19970 0.62 -0.9 2,072,309 + PGA1_c19970 0.64 +0.1 2,072,408 - PGA1_c19970 0.74 -0.1 2,072,583 - +0.4 2,072,598 + +1.3 2,072,598 + +0.2 2,072,619 + -1.2 2,072,624 + +2.3 2,072,624 + +0.5 2,072,627 - +0.3 2,072,632 - +1.6 2,072,632 - +1.1 2,072,692 - +0.0 2,072,699 - -0.2 2,072,737 + PGA1_c19980 0.11 -0.1 2,072,737 + PGA1_c19980 0.11 +1.1 2,072,745 - PGA1_c19980 0.12 +0.5 2,072,745 - PGA1_c19980 0.12 +0.9 2,072,784 + PGA1_c19980 0.20 +0.3 2,072,812 - PGA1_c19980 0.25 +0.2 2,072,981 - PGA1_c19980 0.56 +0.2 2,072,986 + PGA1_c19980 0.57 +0.8 2,073,038 - PGA1_c19980 0.66 +0.8 2,073,064 - PGA1_c19980 0.71 -0.1 2,073,243 - +2.4 2,073,248 - -0.2 2,073,329 - -0.3 2,073,463 + PGA1_c19990 0.18 +1.5 2,073,517 + PGA1_c19990 0.23 +0.7 2,073,525 - PGA1_c19990 0.23 +0.8 2,073,577 - PGA1_c19990 0.28 +0.5 2,073,586 + PGA1_c19990 0.28 +0.0 2,073,594 - PGA1_c19990 0.29 +0.2 2,073,594 - PGA1_c19990 0.29 +0.7 2,073,732 - PGA1_c19990 0.40 +0.4 2,073,760 + PGA1_c19990 0.43 -1.2 2,073,802 - PGA1_c19990 0.46 -0.1 2,073,913 + PGA1_c19990 0.55 -0.2 2,073,918 + PGA1_c19990 0.56 -0.4 2,073,937 + PGA1_c19990 0.57 -0.0 2,073,945 - PGA1_c19990 0.58 +0.4 2,073,985 - PGA1_c19990 0.61 -0.2 2,074,001 - PGA1_c19990 0.62 +1.0 2,074,010 + PGA1_c19990 0.63 -0.6 2,074,044 + PGA1_c19990 0.66 -1.1 2,074,044 + PGA1_c19990 0.66 -0.2 2,074,044 + PGA1_c19990 0.66 -1.0 2,074,049 + PGA1_c19990 0.66 -1.3 2,074,052 - PGA1_c19990 0.67 +0.5 2,074,062 - PGA1_c19990 0.67 +0.4 2,074,123 + PGA1_c19990 0.73 -0.4 2,074,140 + PGA1_c19990 0.74 -0.2 2,074,148 - PGA1_c19990 0.75 -1.8 2,074,172 + PGA1_c19990 0.77 +0.4 2,074,185 - PGA1_c19990 0.78 -0.1 2,074,196 - PGA1_c19990 0.79 +0.4
Or see this region's nucleotide sequence