Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19130

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19110 and PGA1_c19120 are separated by 176 nucleotidesPGA1_c19120 and PGA1_c19130 are separated by 35 nucleotidesPGA1_c19130 and PGA1_c19140 are separated by 177 nucleotidesPGA1_c19140 and PGA1_c19150 overlap by 8 nucleotides PGA1_c19110: PGA1_c19110 - superoxide dismutase SodB, at 1,984,570 to 1,985,169 _c19110 PGA1_c19120: PGA1_c19120 - hypothetical protein, at 1,985,346 to 1,985,843 _c19120 PGA1_c19130: PGA1_c19130 - hypothetical protein, at 1,985,879 to 1,986,334 _c19130 PGA1_c19140: PGA1_c19140 - sarcosine oxidase-like protein, at 1,986,512 to 1,987,084 _c19140 PGA1_c19150: PGA1_c19150 - sarcosine oxidase subunit alpha, at 1,987,077 to 1,990,109 _c19150 Position (kb) 1985 1986 1987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1985.184 kb on - strandat 1985.214 kb on - strandat 1985.236 kb on + strandat 1985.239 kb on - strandat 1985.244 kb on - strandat 1985.299 kb on - strandat 1985.352 kb on - strandat 1985.488 kb on + strand, within PGA1_c19120at 1985.520 kb on - strand, within PGA1_c19120at 1985.526 kb on - strand, within PGA1_c19120at 1985.568 kb on + strand, within PGA1_c19120at 1985.589 kb on - strand, within PGA1_c19120at 1985.639 kb on + strand, within PGA1_c19120at 1985.665 kb on + strand, within PGA1_c19120at 1985.670 kb on + strand, within PGA1_c19120at 1985.730 kb on + strand, within PGA1_c19120at 1985.757 kb on - strand, within PGA1_c19120at 1985.775 kb on + strand, within PGA1_c19120at 1985.783 kb on - strand, within PGA1_c19120at 1985.817 kb on + strandat 1985.902 kb on + strandat 1985.910 kb on - strandat 1985.920 kb on + strandat 1985.952 kb on + strand, within PGA1_c19130at 1985.958 kb on - strand, within PGA1_c19130at 1985.975 kb on + strand, within PGA1_c19130at 1985.983 kb on - strand, within PGA1_c19130at 1986.040 kb on + strand, within PGA1_c19130at 1986.040 kb on - strand, within PGA1_c19130at 1986.107 kb on - strand, within PGA1_c19130at 1986.111 kb on + strand, within PGA1_c19130at 1986.136 kb on + strand, within PGA1_c19130at 1986.191 kb on - strand, within PGA1_c19130at 1986.225 kb on - strand, within PGA1_c19130at 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.349 kb on + strandat 1986.357 kb on - strandat 1986.357 kb on - strandat 1986.357 kb on - strandat 1986.357 kb on - strandat 1986.366 kb on + strandat 1986.418 kb on - strandat 1986.456 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.472 kb on + strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.480 kb on - strandat 1986.507 kb on - strandat 1986.517 kb on - strandat 1986.560 kb on - strandat 1986.563 kb on - strandat 1986.625 kb on - strand, within PGA1_c19140at 1986.647 kb on - strand, within PGA1_c19140at 1986.671 kb on - strand, within PGA1_c19140at 1986.698 kb on + strand, within PGA1_c19140at 1986.769 kb on + strand, within PGA1_c19140at 1986.809 kb on - strand, within PGA1_c19140at 1986.851 kb on + strand, within PGA1_c19140at 1986.899 kb on - strand, within PGA1_c19140at 1986.904 kb on - strand, within PGA1_c19140at 1986.917 kb on - strand, within PGA1_c19140at 1987.023 kb on + strand, within PGA1_c19140at 1987.024 kb on + strand, within PGA1_c19140at 1987.074 kb on + strandat 1987.074 kb on + strandat 1987.082 kb on - strandat 1987.126 kb on + strandat 1987.195 kb on + strandat 1987.203 kb on - strandat 1987.232 kb on - strandat 1987.232 kb on - strandat 1987.275 kb on - strandat 1987.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,985,184 - +1.4
1,985,214 - +0.8
1,985,236 + -1.1
1,985,239 - -0.8
1,985,244 - +1.0
1,985,299 - -0.5
1,985,352 - -0.1
1,985,488 + PGA1_c19120 0.29 -2.8
1,985,520 - PGA1_c19120 0.35 -1.1
1,985,526 - PGA1_c19120 0.36 -1.4
1,985,568 + PGA1_c19120 0.45 -1.1
1,985,589 - PGA1_c19120 0.49 +0.5
1,985,639 + PGA1_c19120 0.59 -0.1
1,985,665 + PGA1_c19120 0.64 +0.5
1,985,670 + PGA1_c19120 0.65 -0.1
1,985,730 + PGA1_c19120 0.77 +0.1
1,985,757 - PGA1_c19120 0.83 -0.8
1,985,775 + PGA1_c19120 0.86 +1.1
1,985,783 - PGA1_c19120 0.88 -0.7
1,985,817 + -0.3
1,985,902 + -0.3
1,985,910 - -1.8
1,985,920 + +2.0
1,985,952 + PGA1_c19130 0.16 +0.4
1,985,958 - PGA1_c19130 0.17 +1.5
1,985,975 + PGA1_c19130 0.21 +0.0
1,985,983 - PGA1_c19130 0.23 -0.2
1,986,040 + PGA1_c19130 0.35 +1.2
1,986,040 - PGA1_c19130 0.35 +1.0
1,986,107 - PGA1_c19130 0.50 +1.2
1,986,111 + PGA1_c19130 0.51 +2.5
1,986,136 + PGA1_c19130 0.56 -0.2
1,986,191 - PGA1_c19130 0.68 -1.2
1,986,225 - PGA1_c19130 0.76 -0.2
1,986,349 + -0.5
1,986,349 + -1.5
1,986,349 + -0.8
1,986,349 + +0.3
1,986,349 + -0.2
1,986,349 + -1.3
1,986,349 + +1.3
1,986,349 + -0.3
1,986,349 + +0.1
1,986,357 - +0.8
1,986,357 - -2.3
1,986,357 - +0.7
1,986,357 - +1.6
1,986,366 + +0.5
1,986,418 - +1.3
1,986,456 + +1.5
1,986,472 + +0.1
1,986,472 + +1.3
1,986,472 + -0.3
1,986,472 + -0.2
1,986,472 + -0.5
1,986,472 + -0.9
1,986,472 + -0.0
1,986,472 + +0.1
1,986,480 - +0.8
1,986,480 - +0.2
1,986,480 - +0.5
1,986,480 - +1.2
1,986,480 - +0.9
1,986,480 - -1.1
1,986,480 - +0.4
1,986,480 - -1.8
1,986,480 - -0.3
1,986,480 - +0.4
1,986,480 - -1.5
1,986,507 - -1.1
1,986,517 - +0.5
1,986,560 - +1.8
1,986,563 - -0.7
1,986,625 - PGA1_c19140 0.20 +0.2
1,986,647 - PGA1_c19140 0.24 -1.1
1,986,671 - PGA1_c19140 0.28 +0.5
1,986,698 + PGA1_c19140 0.32 -0.3
1,986,769 + PGA1_c19140 0.45 -0.5
1,986,809 - PGA1_c19140 0.52 -1.8
1,986,851 + PGA1_c19140 0.59 +0.0
1,986,899 - PGA1_c19140 0.68 -0.5
1,986,904 - PGA1_c19140 0.68 +0.1
1,986,917 - PGA1_c19140 0.71 -0.3
1,987,023 + PGA1_c19140 0.89 +0.7
1,987,024 + PGA1_c19140 0.89 -0.7
1,987,074 + +0.8
1,987,074 + +1.0
1,987,082 - +1.2
1,987,126 + -0.5
1,987,195 + +0.3
1,987,203 - +0.0
1,987,232 - -0.9
1,987,232 - +1.0
1,987,275 - -1.0
1,987,294 + -0.4

Or see this region's nucleotide sequence