Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16780

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16760 and PGA1_c16770 are separated by 852 nucleotidesPGA1_c16770 and PGA1_c16780 are separated by 43 nucleotidesPGA1_c16780 and PGA1_c16790 are separated by 4 nucleotidesPGA1_c16790 and PGA1_c16800 are separated by 118 nucleotides PGA1_c16760: PGA1_c16760 - vitamin B12-dependent ribonucleotide reductase NrdJ, at 1,747,448 to 1,751,092 _c16760 PGA1_c16770: PGA1_c16770 - tRNA-Pro, at 1,751,945 to 1,752,021 _c16770 PGA1_c16780: PGA1_c16780 - Uncharacterized conserved protein, at 1,752,065 to 1,752,607 _c16780 PGA1_c16790: PGA1_c16790 - putative cold shock protein, at 1,752,612 to 1,753,148 _c16790 PGA1_c16800: PGA1_c16800 - pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH, at 1,753,267 to 1,753,872 _c16800 Position (kb) 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1751.188 kb on + strandat 1751.188 kb on + strandat 1751.188 kb on + strandat 1751.196 kb on - strandat 1751.196 kb on - strandat 1751.300 kb on - strandat 1751.398 kb on - strandat 1751.399 kb on - strandat 1751.435 kb on + strandat 1751.447 kb on - strandat 1751.488 kb on - strandat 1751.494 kb on + strandat 1751.502 kb on - strandat 1751.528 kb on - strandat 1751.551 kb on + strandat 1751.551 kb on + strandat 1751.551 kb on + strandat 1751.551 kb on + strandat 1751.552 kb on + strandat 1751.552 kb on + strandat 1751.552 kb on + strandat 1751.552 kb on + strandat 1751.559 kb on - strandat 1751.559 kb on - strandat 1751.559 kb on - strandat 1751.560 kb on - strandat 1751.560 kb on - strandat 1751.560 kb on - strandat 1751.560 kb on - strandat 1751.562 kb on + strandat 1751.598 kb on + strandat 1751.598 kb on + strandat 1751.606 kb on - strandat 1751.666 kb on + strandat 1751.686 kb on + strandat 1751.686 kb on + strandat 1751.694 kb on - strandat 1751.745 kb on - strandat 1751.754 kb on + strandat 1751.759 kb on + strandat 1751.795 kb on + strandat 1751.802 kb on + strandat 1751.819 kb on - strandat 1751.834 kb on + strandat 1752.112 kb on + strandat 1752.120 kb on - strand, within PGA1_c16780at 1752.120 kb on - strand, within PGA1_c16780at 1752.120 kb on - strand, within PGA1_c16780at 1752.120 kb on - strand, within PGA1_c16780at 1752.250 kb on - strand, within PGA1_c16780at 1752.265 kb on + strand, within PGA1_c16780at 1752.290 kb on - strand, within PGA1_c16780at 1752.334 kb on - strand, within PGA1_c16780at 1752.533 kb on - strand, within PGA1_c16780at 1752.630 kb on + strandat 1752.659 kb on + strandat 1752.728 kb on + strand, within PGA1_c16790at 1752.736 kb on - strand, within PGA1_c16790at 1752.795 kb on + strand, within PGA1_c16790at 1752.803 kb on - strand, within PGA1_c16790at 1752.810 kb on - strand, within PGA1_c16790at 1752.828 kb on - strand, within PGA1_c16790at 1753.012 kb on + strand, within PGA1_c16790at 1753.067 kb on + strand, within PGA1_c16790at 1753.080 kb on + strand, within PGA1_c16790at 1753.081 kb on + strand, within PGA1_c16790at 1753.099 kb on - strandat 1753.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,751,188 + +0.7
1,751,188 + +0.3
1,751,188 + +0.5
1,751,196 - -0.5
1,751,196 - +1.8
1,751,300 - -0.2
1,751,398 - +1.3
1,751,399 - +0.5
1,751,435 + +1.3
1,751,447 - +1.1
1,751,488 - -2.3
1,751,494 + +0.5
1,751,502 - +1.5
1,751,528 - -0.9
1,751,551 + -3.0
1,751,551 + +0.4
1,751,551 + +1.8
1,751,551 + -1.1
1,751,552 + -0.2
1,751,552 + +0.5
1,751,552 + +0.9
1,751,552 + -0.3
1,751,559 - -0.4
1,751,559 - -0.1
1,751,559 - -1.1
1,751,560 - -1.4
1,751,560 - +0.1
1,751,560 - -0.1
1,751,560 - -0.1
1,751,562 + -0.4
1,751,598 + -1.0
1,751,598 + +1.2
1,751,606 - -0.2
1,751,666 + -0.3
1,751,686 + +0.7
1,751,686 + -3.0
1,751,694 - -1.1
1,751,745 - +0.2
1,751,754 + -0.5
1,751,759 + -0.2
1,751,795 + +1.5
1,751,802 + -0.7
1,751,819 - +1.0
1,751,834 + -0.4
1,752,112 + -0.0
1,752,120 - PGA1_c16780 0.10 +0.4
1,752,120 - PGA1_c16780 0.10 +0.6
1,752,120 - PGA1_c16780 0.10 +1.0
1,752,120 - PGA1_c16780 0.10 -0.8
1,752,250 - PGA1_c16780 0.34 +0.6
1,752,265 + PGA1_c16780 0.37 +0.1
1,752,290 - PGA1_c16780 0.41 +0.8
1,752,334 - PGA1_c16780 0.50 +1.6
1,752,533 - PGA1_c16780 0.86 +0.8
1,752,630 + +0.1
1,752,659 + -0.5
1,752,728 + PGA1_c16790 0.22 +1.0
1,752,736 - PGA1_c16790 0.23 -0.1
1,752,795 + PGA1_c16790 0.34 -0.5
1,752,803 - PGA1_c16790 0.36 +1.2
1,752,810 - PGA1_c16790 0.37 -0.3
1,752,828 - PGA1_c16790 0.40 -0.8
1,753,012 + PGA1_c16790 0.74 -0.9
1,753,067 + PGA1_c16790 0.85 -2.1
1,753,080 + PGA1_c16790 0.87 -0.9
1,753,081 + PGA1_c16790 0.87 -2.3
1,753,099 - +0.5
1,753,158 - +2.7

Or see this region's nucleotide sequence