Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16540

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16520 and PGA1_c16530 overlap by 4 nucleotidesPGA1_c16530 and PGA1_c16540 overlap by 8 nucleotidesPGA1_c16540 and PGA1_c16550 overlap by 1 nucleotides PGA1_c16520: PGA1_c16520 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,298 to 1,714,987 _c16520 PGA1_c16530: PGA1_c16530 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,984 to 1,715,754 _c16530 PGA1_c16540: PGA1_c16540 - putative branched-chain amino acid transport system, permease component, at 1,715,747 to 1,716,730 _c16540 PGA1_c16550: PGA1_c16550 - putative branched-chain amino acid transport system, permease component, at 1,716,730 to 1,717,650 _c16550 Position (kb) 1715 1716 1717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1714.836 kb on + strand, within PGA1_c16520at 1714.921 kb on - strandat 1715.035 kb on - strandat 1715.206 kb on - strand, within PGA1_c16530at 1715.210 kb on + strand, within PGA1_c16530at 1715.296 kb on - strand, within PGA1_c16530at 1715.323 kb on + strand, within PGA1_c16530at 1715.377 kb on - strand, within PGA1_c16530at 1715.426 kb on + strand, within PGA1_c16530at 1715.491 kb on + strand, within PGA1_c16530at 1715.495 kb on + strand, within PGA1_c16530at 1715.499 kb on - strand, within PGA1_c16530at 1715.499 kb on - strand, within PGA1_c16530at 1715.671 kb on - strand, within PGA1_c16530at 1715.782 kb on - strandat 1715.885 kb on + strand, within PGA1_c16540at 1715.885 kb on + strand, within PGA1_c16540at 1715.890 kb on + strand, within PGA1_c16540at 1715.898 kb on - strand, within PGA1_c16540at 1715.900 kb on + strand, within PGA1_c16540at 1715.903 kb on - strand, within PGA1_c16540at 1715.928 kb on - strand, within PGA1_c16540at 1715.928 kb on - strand, within PGA1_c16540at 1715.964 kb on - strand, within PGA1_c16540at 1716.073 kb on + strand, within PGA1_c16540at 1716.078 kb on - strand, within PGA1_c16540at 1716.081 kb on - strand, within PGA1_c16540at 1716.081 kb on - strand, within PGA1_c16540at 1716.101 kb on - strand, within PGA1_c16540at 1716.145 kb on - strand, within PGA1_c16540at 1716.145 kb on - strand, within PGA1_c16540at 1716.245 kb on - strand, within PGA1_c16540at 1716.245 kb on - strand, within PGA1_c16540at 1716.281 kb on + strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.289 kb on - strand, within PGA1_c16540at 1716.337 kb on - strand, within PGA1_c16540at 1716.363 kb on - strand, within PGA1_c16540at 1716.363 kb on - strand, within PGA1_c16540at 1716.460 kb on + strand, within PGA1_c16540at 1716.556 kb on + strand, within PGA1_c16540at 1716.557 kb on + strand, within PGA1_c16540at 1716.576 kb on - strand, within PGA1_c16540at 1716.588 kb on - strand, within PGA1_c16540at 1716.605 kb on - strand, within PGA1_c16540at 1716.728 kb on + strandat 1716.733 kb on + strandat 1716.830 kb on + strand, within PGA1_c16550at 1716.850 kb on - strand, within PGA1_c16550at 1716.860 kb on - strand, within PGA1_c16550at 1716.992 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.016 kb on + strand, within PGA1_c16550at 1717.024 kb on - strand, within PGA1_c16550at 1717.024 kb on - strand, within PGA1_c16550at 1717.069 kb on - strand, within PGA1_c16550at 1717.081 kb on - strand, within PGA1_c16550at 1717.197 kb on + strand, within PGA1_c16550at 1717.228 kb on + strand, within PGA1_c16550at 1717.241 kb on - strand, within PGA1_c16550at 1717.255 kb on + strand, within PGA1_c16550at 1717.255 kb on + strand, within PGA1_c16550at 1717.309 kb on + strand, within PGA1_c16550at 1717.309 kb on + strand, within PGA1_c16550at 1717.309 kb on - strand, within PGA1_c16550at 1717.317 kb on - strand, within PGA1_c16550at 1717.344 kb on + strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.352 kb on - strand, within PGA1_c16550at 1717.381 kb on + strand, within PGA1_c16550at 1717.389 kb on - strand, within PGA1_c16550at 1717.389 kb on - strand, within PGA1_c16550at 1717.530 kb on + strand, within PGA1_c16550at 1717.561 kb on + strandat 1717.561 kb on + strandat 1717.566 kb on + strandat 1717.567 kb on + strandat 1717.567 kb on + strandat 1717.569 kb on - strandat 1717.575 kb on - strandat 1717.658 kb on - strandat 1717.661 kb on + strandat 1717.661 kb on + strandat 1717.661 kb on + strandat 1717.667 kb on + strandat 1717.667 kb on + strandat 1717.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,714,836 + PGA1_c16520 0.78 -1.8
1,714,921 - -0.1
1,715,035 - +0.6
1,715,206 - PGA1_c16530 0.29 +0.9
1,715,210 + PGA1_c16530 0.29 +0.3
1,715,296 - PGA1_c16530 0.40 -1.1
1,715,323 + PGA1_c16530 0.44 -1.1
1,715,377 - PGA1_c16530 0.51 +0.4
1,715,426 + PGA1_c16530 0.57 -0.5
1,715,491 + PGA1_c16530 0.66 -0.5
1,715,495 + PGA1_c16530 0.66 +0.3
1,715,499 - PGA1_c16530 0.67 -3.4
1,715,499 - PGA1_c16530 0.67 +0.1
1,715,671 - PGA1_c16530 0.89 +0.1
1,715,782 - +0.5
1,715,885 + PGA1_c16540 0.14 -0.5
1,715,885 + PGA1_c16540 0.14 -0.5
1,715,890 + PGA1_c16540 0.15 -0.7
1,715,898 - PGA1_c16540 0.15 +0.7
1,715,900 + PGA1_c16540 0.16 +0.8
1,715,903 - PGA1_c16540 0.16 +1.6
1,715,928 - PGA1_c16540 0.18 -0.2
1,715,928 - PGA1_c16540 0.18 -2.5
1,715,964 - PGA1_c16540 0.22 +0.2
1,716,073 + PGA1_c16540 0.33 -0.1
1,716,078 - PGA1_c16540 0.34 -1.1
1,716,081 - PGA1_c16540 0.34 +1.2
1,716,081 - PGA1_c16540 0.34 +1.2
1,716,101 - PGA1_c16540 0.36 -1.2
1,716,145 - PGA1_c16540 0.40 -0.4
1,716,145 - PGA1_c16540 0.40 +0.3
1,716,245 - PGA1_c16540 0.51 +3.0
1,716,245 - PGA1_c16540 0.51 +1.6
1,716,281 + PGA1_c16540 0.54 +1.5
1,716,289 - PGA1_c16540 0.55 +0.8
1,716,289 - PGA1_c16540 0.55 +0.2
1,716,289 - PGA1_c16540 0.55 -0.5
1,716,337 - PGA1_c16540 0.60 -0.8
1,716,363 - PGA1_c16540 0.63 +0.9
1,716,363 - PGA1_c16540 0.63 +0.9
1,716,460 + PGA1_c16540 0.72 +0.3
1,716,556 + PGA1_c16540 0.82 +0.2
1,716,557 + PGA1_c16540 0.82 +0.4
1,716,576 - PGA1_c16540 0.84 -0.8
1,716,588 - PGA1_c16540 0.85 +1.0
1,716,605 - PGA1_c16540 0.87 +0.5
1,716,728 + +1.4
1,716,733 + -1.9
1,716,830 + PGA1_c16550 0.11 +0.6
1,716,850 - PGA1_c16550 0.13 -0.1
1,716,860 - PGA1_c16550 0.14 -0.4
1,716,992 + PGA1_c16550 0.28 +0.8
1,717,016 + PGA1_c16550 0.31 -0.6
1,717,016 + PGA1_c16550 0.31 +0.5
1,717,016 + PGA1_c16550 0.31 -0.8
1,717,024 - PGA1_c16550 0.32 +0.1
1,717,024 - PGA1_c16550 0.32 -0.7
1,717,069 - PGA1_c16550 0.37 -1.8
1,717,081 - PGA1_c16550 0.38 +0.9
1,717,197 + PGA1_c16550 0.51 -0.2
1,717,228 + PGA1_c16550 0.54 -1.4
1,717,241 - PGA1_c16550 0.55 -0.6
1,717,255 + PGA1_c16550 0.57 +0.4
1,717,255 + PGA1_c16550 0.57 +0.7
1,717,309 + PGA1_c16550 0.63 +0.9
1,717,309 + PGA1_c16550 0.63 +1.1
1,717,309 - PGA1_c16550 0.63 -1.3
1,717,317 - PGA1_c16550 0.64 +0.0
1,717,344 + PGA1_c16550 0.67 -1.0
1,717,352 - PGA1_c16550 0.68 +1.3
1,717,352 - PGA1_c16550 0.68 +0.1
1,717,352 - PGA1_c16550 0.68 +0.9
1,717,352 - PGA1_c16550 0.68 +0.8
1,717,381 + PGA1_c16550 0.71 +0.1
1,717,389 - PGA1_c16550 0.72 -0.5
1,717,389 - PGA1_c16550 0.72 +0.3
1,717,530 + PGA1_c16550 0.87 -0.4
1,717,561 + +0.0
1,717,561 + +0.2
1,717,566 + -0.5
1,717,567 + -3.0
1,717,567 + -1.1
1,717,569 - +1.0
1,717,575 - -1.2
1,717,658 - -0.6
1,717,661 + +0.1
1,717,661 + -0.6
1,717,661 + +1.3
1,717,667 + +0.3
1,717,667 + -0.5
1,717,669 - +0.4

Or see this region's nucleotide sequence