Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16410 and PGA1_c16420 are separated by 58 nucleotides PGA1_c16420 and PGA1_c16430 overlap by 4 nucleotides PGA1_c16430 and PGA1_c16440 are separated by 92 nucleotides
PGA1_c16410: PGA1_c16410 - ribosomal large subunit pseudouridine synthase E, at 1,702,116 to 1,702,814
_c16410
PGA1_c16420: PGA1_c16420 - putative phospholipase / carboxylesterase, at 1,702,873 to 1,703,538
_c16420
PGA1_c16430: PGA1_c16430 - putative DNA repair protein, at 1,703,535 to 1,704,203
_c16430
PGA1_c16440: PGA1_c16440 - MFS transporter, at 1,704,296 to 1,705,522
_c16440
Position (kb)
1702
1703
1704 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1702.029 kb on + strand at 1702.039 kb on + strand at 1702.068 kb on - strand at 1702.071 kb on + strand at 1702.143 kb on + strand at 1702.221 kb on - strand, within PGA1_c16410 at 1702.237 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.391 kb on + strand, within PGA1_c16410 at 1702.438 kb on - strand, within PGA1_c16410 at 1702.470 kb on - strand, within PGA1_c16410 at 1702.483 kb on - strand, within PGA1_c16410 at 1702.514 kb on - strand, within PGA1_c16410 at 1702.519 kb on - strand, within PGA1_c16410 at 1702.699 kb on - strand, within PGA1_c16410 at 1702.699 kb on - strand, within PGA1_c16410 at 1702.725 kb on - strand, within PGA1_c16410 at 1702.725 kb on - strand, within PGA1_c16410 at 1702.735 kb on - strand, within PGA1_c16410 at 1702.735 kb on - strand, within PGA1_c16410 at 1702.808 kb on + strand at 1702.808 kb on + strand at 1702.808 kb on + strand at 1702.808 kb on + strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.816 kb on - strand at 1702.858 kb on - strand at 1702.919 kb on - strand at 1702.933 kb on + strand at 1702.940 kb on + strand, within PGA1_c16420 at 1703.213 kb on - strand, within PGA1_c16420 at 1703.233 kb on - strand, within PGA1_c16420 at 1703.392 kb on + strand, within PGA1_c16420 at 1703.520 kb on - strand at 1703.556 kb on - strand at 1703.597 kb on - strand at 1703.644 kb on + strand, within PGA1_c16430 at 1703.644 kb on + strand, within PGA1_c16430 at 1703.683 kb on + strand, within PGA1_c16430 at 1703.691 kb on - strand, within PGA1_c16430 at 1703.691 kb on - strand, within PGA1_c16430 at 1703.709 kb on + strand, within PGA1_c16430 at 1703.819 kb on + strand, within PGA1_c16430 at 1703.827 kb on - strand, within PGA1_c16430 at 1703.827 kb on - strand, within PGA1_c16430 at 1703.851 kb on + strand, within PGA1_c16430 at 1703.857 kb on - strand, within PGA1_c16430 at 1703.888 kb on + strand, within PGA1_c16430 at 1703.888 kb on + strand, within PGA1_c16430 at 1703.940 kb on + strand, within PGA1_c16430 at 1704.061 kb on + strand, within PGA1_c16430 at 1704.071 kb on + strand, within PGA1_c16430 at 1704.072 kb on - strand, within PGA1_c16430 at 1704.252 kb on + strand at 1704.266 kb on - strand at 1704.410 kb on - strand at 1704.419 kb on + strand, within PGA1_c16440 at 1704.487 kb on - strand, within PGA1_c16440 at 1704.520 kb on + strand, within PGA1_c16440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,702,029 + +0.9 1,702,039 + +0.3 1,702,068 - +0.2 1,702,071 + -1.1 1,702,143 + +0.5 1,702,221 - PGA1_c16410 0.15 -0.5 1,702,237 - PGA1_c16410 0.17 +0.6 1,702,360 - PGA1_c16410 0.35 -0.0 1,702,360 - PGA1_c16410 0.35 +0.8 1,702,360 - PGA1_c16410 0.35 +1.3 1,702,391 + PGA1_c16410 0.39 -1.4 1,702,438 - PGA1_c16410 0.46 +1.6 1,702,470 - PGA1_c16410 0.51 -0.4 1,702,483 - PGA1_c16410 0.53 +0.5 1,702,514 - PGA1_c16410 0.57 +0.6 1,702,519 - PGA1_c16410 0.58 -2.1 1,702,699 - PGA1_c16410 0.83 -0.4 1,702,699 - PGA1_c16410 0.83 +0.5 1,702,725 - PGA1_c16410 0.87 +0.2 1,702,725 - PGA1_c16410 0.87 -0.3 1,702,735 - PGA1_c16410 0.89 +0.8 1,702,735 - PGA1_c16410 0.89 +1.6 1,702,808 + -2.1 1,702,808 + +0.6 1,702,808 + +0.2 1,702,808 + +0.3 1,702,816 - +0.5 1,702,816 - -0.2 1,702,816 - +1.9 1,702,816 - +0.5 1,702,816 - +0.4 1,702,816 - +0.4 1,702,816 - -0.5 1,702,816 - -1.8 1,702,816 - +0.7 1,702,816 - +0.8 1,702,858 - +0.5 1,702,919 - -0.9 1,702,933 + +0.7 1,702,940 + PGA1_c16420 0.10 +1.1 1,703,213 - PGA1_c16420 0.51 +0.4 1,703,233 - PGA1_c16420 0.54 +1.0 1,703,392 + PGA1_c16420 0.78 -0.5 1,703,520 - -1.0 1,703,556 - +2.0 1,703,597 - +0.0 1,703,644 + PGA1_c16430 0.16 -0.8 1,703,644 + PGA1_c16430 0.16 +1.5 1,703,683 + PGA1_c16430 0.22 +1.0 1,703,691 - PGA1_c16430 0.23 +1.5 1,703,691 - PGA1_c16430 0.23 -1.0 1,703,709 + PGA1_c16430 0.26 +0.7 1,703,819 + PGA1_c16430 0.42 -0.4 1,703,827 - PGA1_c16430 0.44 -1.8 1,703,827 - PGA1_c16430 0.44 +0.5 1,703,851 + PGA1_c16430 0.47 +1.5 1,703,857 - PGA1_c16430 0.48 -0.8 1,703,888 + PGA1_c16430 0.53 -0.1 1,703,888 + PGA1_c16430 0.53 +0.8 1,703,940 + PGA1_c16430 0.61 -0.9 1,704,061 + PGA1_c16430 0.79 -0.9 1,704,071 + PGA1_c16430 0.80 -0.3 1,704,072 - PGA1_c16430 0.80 -0.5 1,704,252 + +1.7 1,704,266 - +0.2 1,704,410 - -0.9 1,704,419 + PGA1_c16440 0.10 +0.5 1,704,487 - PGA1_c16440 0.16 -0.7 1,704,520 + PGA1_c16440 0.18 -1.5
Or see this region's nucleotide sequence