Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15590 and PGA1_c15600 overlap by 4 nucleotides PGA1_c15600 and PGA1_c15610 are separated by 203 nucleotides PGA1_c15610 and PGA1_c15620 are separated by 163 nucleotides
PGA1_c15590: PGA1_c15590 - putative transcriptional activator protein, at 1,620,668 to 1,621,423
_c15590
PGA1_c15600: PGA1_c15600 - 3-dehydroquinate dehydratase AroQ, at 1,621,420 to 1,621,869
_c15600
PGA1_c15610: PGA1_c15610 - alcohol dehydrogenase, zinc binding, at 1,622,073 to 1,623,074
_c15610
PGA1_c15620: PGA1_c15620 - Dioxygenases related to 2-nitropropane dioxygenase, at 1,623,238 to 1,624,260
_c15620
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.076 kb on - strand, within PGA1_c15590 at 1621.101 kb on - strand, within PGA1_c15590 at 1621.116 kb on - strand, within PGA1_c15590 at 1621.116 kb on - strand, within PGA1_c15590 at 1621.116 kb on - strand, within PGA1_c15590 at 1621.131 kb on - strand, within PGA1_c15590 at 1621.152 kb on + strand, within PGA1_c15590 at 1621.176 kb on + strand, within PGA1_c15590 at 1621.194 kb on - strand, within PGA1_c15590 at 1621.223 kb on + strand, within PGA1_c15590 at 1621.231 kb on - strand, within PGA1_c15590 at 1621.231 kb on - strand, within PGA1_c15590 at 1621.233 kb on - strand, within PGA1_c15590 at 1621.303 kb on + strand, within PGA1_c15590 at 1621.303 kb on + strand, within PGA1_c15590 at 1621.311 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.338 kb on + strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.346 kb on - strand, within PGA1_c15590 at 1621.362 kb on + strand at 1621.378 kb on - strand at 1621.380 kb on - strand at 1621.903 kb on - strand at 1621.923 kb on + strand at 1621.938 kb on - strand at 1621.947 kb on + strand at 1622.068 kb on - strand at 1622.069 kb on - strand at 1622.130 kb on + strand at 1622.194 kb on + strand, within PGA1_c15610 at 1622.240 kb on - strand, within PGA1_c15610 at 1622.240 kb on - strand, within PGA1_c15610 at 1622.263 kb on + strand, within PGA1_c15610 at 1622.263 kb on + strand, within PGA1_c15610 at 1622.263 kb on + strand, within PGA1_c15610 at 1622.263 kb on + strand, within PGA1_c15610 at 1622.271 kb on - strand, within PGA1_c15610 at 1622.351 kb on + strand, within PGA1_c15610 at 1622.387 kb on + strand, within PGA1_c15610 at 1622.480 kb on - strand, within PGA1_c15610 at 1622.500 kb on - strand, within PGA1_c15610 at 1622.598 kb on - strand, within PGA1_c15610 at 1622.678 kb on - strand, within PGA1_c15610 at 1622.686 kb on - strand, within PGA1_c15610 at 1622.699 kb on + strand, within PGA1_c15610 at 1622.701 kb on + strand, within PGA1_c15610 at 1622.726 kb on + strand, within PGA1_c15610 at 1622.849 kb on - strand, within PGA1_c15610 at 1622.897 kb on + strand, within PGA1_c15610 at 1623.012 kb on + strand at 1623.063 kb on - strand at 1623.063 kb on - strand at 1623.063 kb on - strand at 1623.088 kb on + strand at 1623.135 kb on + strand at 1623.143 kb on - strand at 1623.222 kb on + strand at 1623.283 kb on + strand at 1623.345 kb on + strand, within PGA1_c15620 at 1623.368 kb on - strand, within PGA1_c15620 at 1623.516 kb on + strand, within PGA1_c15620 at 1623.516 kb on + strand, within PGA1_c15620 at 1623.582 kb on + strand, within PGA1_c15620 at 1623.634 kb on + strand, within PGA1_c15620 at 1623.634 kb on + strand, within PGA1_c15620 at 1623.634 kb on + strand, within PGA1_c15620 at 1623.650 kb on + strand, within PGA1_c15620 at 1623.650 kb on + strand, within PGA1_c15620 at 1623.805 kb on - strand, within PGA1_c15620 at 1623.817 kb on - strand, within PGA1_c15620 at 1624.027 kb on - strand, within PGA1_c15620 at 1624.059 kb on - strand, within PGA1_c15620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,621,076 - PGA1_c15590 0.54 +0.7 1,621,076 - PGA1_c15590 0.54 +0.2 1,621,076 - PGA1_c15590 0.54 +0.4 1,621,076 - PGA1_c15590 0.54 +0.8 1,621,076 - PGA1_c15590 0.54 -0.1 1,621,076 - PGA1_c15590 0.54 -1.1 1,621,076 - PGA1_c15590 0.54 +1.0 1,621,076 - PGA1_c15590 0.54 +0.2 1,621,076 - PGA1_c15590 0.54 +1.4 1,621,076 - PGA1_c15590 0.54 +2.3 1,621,076 - PGA1_c15590 0.54 +0.6 1,621,076 - PGA1_c15590 0.54 +0.2 1,621,076 - PGA1_c15590 0.54 +1.0 1,621,076 - PGA1_c15590 0.54 +0.6 1,621,076 - PGA1_c15590 0.54 +1.6 1,621,076 - PGA1_c15590 0.54 +0.3 1,621,076 - PGA1_c15590 0.54 +1.6 1,621,076 - PGA1_c15590 0.54 +0.8 1,621,076 - PGA1_c15590 0.54 +1.7 1,621,076 - PGA1_c15590 0.54 +0.1 1,621,076 - PGA1_c15590 0.54 +0.1 1,621,076 - PGA1_c15590 0.54 +0.4 1,621,076 - PGA1_c15590 0.54 +3.1 1,621,076 - PGA1_c15590 0.54 +0.8 1,621,076 - PGA1_c15590 0.54 +0.9 1,621,076 - PGA1_c15590 0.54 -0.5 1,621,076 - PGA1_c15590 0.54 +0.7 1,621,076 - PGA1_c15590 0.54 -0.1 1,621,101 - PGA1_c15590 0.57 +0.4 1,621,116 - PGA1_c15590 0.59 +2.2 1,621,116 - PGA1_c15590 0.59 -0.4 1,621,116 - PGA1_c15590 0.59 +0.6 1,621,131 - PGA1_c15590 0.61 +1.3 1,621,152 + PGA1_c15590 0.64 +0.8 1,621,176 + PGA1_c15590 0.67 +0.7 1,621,194 - PGA1_c15590 0.70 +0.5 1,621,223 + PGA1_c15590 0.73 -0.9 1,621,231 - PGA1_c15590 0.74 +1.8 1,621,231 - PGA1_c15590 0.74 -1.5 1,621,233 - PGA1_c15590 0.75 +0.8 1,621,303 + PGA1_c15590 0.84 +1.2 1,621,303 + PGA1_c15590 0.84 +1.4 1,621,311 + PGA1_c15590 0.85 -0.3 1,621,338 + PGA1_c15590 0.89 +0.4 1,621,338 + PGA1_c15590 0.89 +1.3 1,621,338 + PGA1_c15590 0.89 +0.1 1,621,338 + PGA1_c15590 0.89 +0.6 1,621,338 + PGA1_c15590 0.89 -2.3 1,621,338 + PGA1_c15590 0.89 +1.3 1,621,338 + PGA1_c15590 0.89 +0.0 1,621,338 + PGA1_c15590 0.89 +1.4 1,621,338 + PGA1_c15590 0.89 +0.1 1,621,346 - PGA1_c15590 0.90 +0.4 1,621,346 - PGA1_c15590 0.90 +0.3 1,621,346 - PGA1_c15590 0.90 +1.1 1,621,346 - PGA1_c15590 0.90 +1.2 1,621,346 - PGA1_c15590 0.90 +0.9 1,621,346 - PGA1_c15590 0.90 +1.5 1,621,346 - PGA1_c15590 0.90 +0.3 1,621,346 - PGA1_c15590 0.90 +0.8 1,621,346 - PGA1_c15590 0.90 -0.2 1,621,362 + +0.7 1,621,378 - +1.4 1,621,380 - +0.8 1,621,903 - -0.5 1,621,923 + +0.3 1,621,938 - +0.5 1,621,947 + -0.3 1,622,068 - +1.7 1,622,069 - -3.2 1,622,130 + -1.7 1,622,194 + PGA1_c15610 0.12 -0.1 1,622,240 - PGA1_c15610 0.17 +0.5 1,622,240 - PGA1_c15610 0.17 +0.9 1,622,263 + PGA1_c15610 0.19 +1.3 1,622,263 + PGA1_c15610 0.19 +0.9 1,622,263 + PGA1_c15610 0.19 -0.4 1,622,263 + PGA1_c15610 0.19 +3.2 1,622,271 - PGA1_c15610 0.20 -0.8 1,622,351 + PGA1_c15610 0.28 +0.1 1,622,387 + PGA1_c15610 0.31 +0.1 1,622,480 - PGA1_c15610 0.41 +0.7 1,622,500 - PGA1_c15610 0.43 +0.0 1,622,598 - PGA1_c15610 0.52 +0.6 1,622,678 - PGA1_c15610 0.60 +0.5 1,622,686 - PGA1_c15610 0.61 +2.1 1,622,699 + PGA1_c15610 0.62 +2.1 1,622,701 + PGA1_c15610 0.63 +0.0 1,622,726 + PGA1_c15610 0.65 +0.6 1,622,849 - PGA1_c15610 0.77 -0.7 1,622,897 + PGA1_c15610 0.82 +0.5 1,623,012 + -1.5 1,623,063 - +0.8 1,623,063 - -0.1 1,623,063 - -1.7 1,623,088 + +0.2 1,623,135 + +1.0 1,623,143 - -0.0 1,623,222 + +0.9 1,623,283 + +0.9 1,623,345 + PGA1_c15620 0.10 +0.6 1,623,368 - PGA1_c15620 0.13 +0.7 1,623,516 + PGA1_c15620 0.27 -0.1 1,623,516 + PGA1_c15620 0.27 +1.1 1,623,582 + PGA1_c15620 0.34 +0.4 1,623,634 + PGA1_c15620 0.39 -2.6 1,623,634 + PGA1_c15620 0.39 -0.8 1,623,634 + PGA1_c15620 0.39 +1.1 1,623,650 + PGA1_c15620 0.40 -1.3 1,623,650 + PGA1_c15620 0.40 -0.5 1,623,805 - PGA1_c15620 0.55 -0.1 1,623,817 - PGA1_c15620 0.57 +0.2 1,624,027 - PGA1_c15620 0.77 +0.5 1,624,059 - PGA1_c15620 0.80 -0.3
Or see this region's nucleotide sequence