Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15270

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15260 and PGA1_c15270 are separated by 212 nucleotidesPGA1_c15270 and PGA1_c15280 are separated by 94 nucleotidesPGA1_c15280 and PGA1_c15290 are separated by 80 nucleotides PGA1_c15260: PGA1_c15260 - protein recA (recombinase A), at 1,589,307 to 1,590,374 _c15260 PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238 _c15270 PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620 _c15280 PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282 _c15290 Position (kb) 1590 1591 1592 1593 1594Strain fitness (log2 ratio) -3 -2 -1 0 1at 1589.693 kb on + strand, within PGA1_c15260at 1589.943 kb on + strand, within PGA1_c15260at 1590.068 kb on + strand, within PGA1_c15260at 1590.234 kb on + strand, within PGA1_c15260at 1590.234 kb on + strand, within PGA1_c15260at 1590.308 kb on - strandat 1590.315 kb on + strandat 1590.397 kb on + strandat 1590.515 kb on + strandat 1590.515 kb on + strandat 1590.515 kb on + strandat 1590.518 kb on - strandat 1593.238 kb on + strandat 1593.314 kb on + strandat 1593.519 kb on - strand, within PGA1_c15280at 1593.558 kb on + strand, within PGA1_c15280at 1593.558 kb on + strand, within PGA1_c15280at 1593.566 kb on - strand, within PGA1_c15280at 1593.573 kb on - strand, within PGA1_c15280at 1593.588 kb on - strand, within PGA1_c15280at 1593.641 kb on + strandat 1593.649 kb on - strandat 1593.718 kb on - strandat 1593.718 kb on - strandat 1593.718 kb on - strandat 1593.732 kb on + strandat 1593.788 kb on + strand, within PGA1_c15290at 1593.836 kb on + strand, within PGA1_c15290at 1594.036 kb on - strand, within PGA1_c15290at 1594.085 kb on + strand, within PGA1_c15290at 1594.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,589,693 + PGA1_c15260 0.36 -1.8
1,589,943 + PGA1_c15260 0.60 -2.1
1,590,068 + PGA1_c15260 0.71 -1.3
1,590,234 + PGA1_c15260 0.87 -2.8
1,590,234 + PGA1_c15260 0.87 -3.4
1,590,308 - -2.7
1,590,315 + -1.8
1,590,397 + +0.5
1,590,515 + +1.7
1,590,515 + +0.3
1,590,515 + +0.2
1,590,518 - -0.7
1,593,238 + +0.2
1,593,314 + +1.0
1,593,519 - PGA1_c15280 0.65 +0.5
1,593,558 + PGA1_c15280 0.78 +0.6
1,593,558 + PGA1_c15280 0.78 -1.1
1,593,566 - PGA1_c15280 0.81 -0.5
1,593,573 - PGA1_c15280 0.83 +1.4
1,593,588 - PGA1_c15280 0.89 +0.1
1,593,641 + +0.9
1,593,649 - -0.4
1,593,718 - +0.2
1,593,718 - -0.3
1,593,718 - -0.2
1,593,732 + -0.4
1,593,788 + PGA1_c15290 0.15 +1.0
1,593,836 + PGA1_c15290 0.23 +0.5
1,594,036 - PGA1_c15290 0.58 +0.7
1,594,085 + PGA1_c15290 0.66 +0.3
1,594,238 + +0.0

Or see this region's nucleotide sequence