Experiment: m.b. Cisplatin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15260 and PGA1_c15270 are separated by 212 nucleotides PGA1_c15270 and PGA1_c15280 are separated by 94 nucleotides PGA1_c15280 and PGA1_c15290 are separated by 80 nucleotides
PGA1_c15260: PGA1_c15260 - protein recA (recombinase A), at 1,589,307 to 1,590,374
_c15260
PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238
_c15270
PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620
_c15280
PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282
_c15290
Position (kb)
1590
1591
1592
1593
1594 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1589.693 kb on + strand, within PGA1_c15260 at 1589.943 kb on + strand, within PGA1_c15260 at 1590.068 kb on + strand, within PGA1_c15260 at 1590.234 kb on + strand, within PGA1_c15260 at 1590.234 kb on + strand, within PGA1_c15260 at 1590.308 kb on - strand at 1590.315 kb on + strand at 1590.397 kb on + strand at 1590.515 kb on + strand at 1590.515 kb on + strand at 1590.515 kb on + strand at 1590.518 kb on - strand at 1593.238 kb on + strand at 1593.314 kb on + strand at 1593.519 kb on - strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.566 kb on - strand, within PGA1_c15280 at 1593.573 kb on - strand, within PGA1_c15280 at 1593.588 kb on - strand, within PGA1_c15280 at 1593.641 kb on + strand at 1593.649 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.732 kb on + strand at 1593.788 kb on + strand, within PGA1_c15290 at 1593.836 kb on + strand, within PGA1_c15290 at 1594.036 kb on - strand, within PGA1_c15290 at 1594.085 kb on + strand, within PGA1_c15290 at 1594.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml remove 1,589,693 + PGA1_c15260 0.36 -1.8 1,589,943 + PGA1_c15260 0.60 -2.1 1,590,068 + PGA1_c15260 0.71 -1.3 1,590,234 + PGA1_c15260 0.87 -2.8 1,590,234 + PGA1_c15260 0.87 -3.4 1,590,308 - -2.7 1,590,315 + -1.8 1,590,397 + +0.5 1,590,515 + +1.7 1,590,515 + +0.3 1,590,515 + +0.2 1,590,518 - -0.7 1,593,238 + +0.2 1,593,314 + +1.0 1,593,519 - PGA1_c15280 0.65 +0.5 1,593,558 + PGA1_c15280 0.78 +0.6 1,593,558 + PGA1_c15280 0.78 -1.1 1,593,566 - PGA1_c15280 0.81 -0.5 1,593,573 - PGA1_c15280 0.83 +1.4 1,593,588 - PGA1_c15280 0.89 +0.1 1,593,641 + +0.9 1,593,649 - -0.4 1,593,718 - +0.2 1,593,718 - -0.3 1,593,718 - -0.2 1,593,732 + -0.4 1,593,788 + PGA1_c15290 0.15 +1.0 1,593,836 + PGA1_c15290 0.23 +0.5 1,594,036 - PGA1_c15290 0.58 +0.7 1,594,085 + PGA1_c15290 0.66 +0.3 1,594,238 + +0.0
Or see this region's nucleotide sequence