Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14810

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14800 and PGA1_c14810 overlap by 4 nucleotidesPGA1_c14810 and PGA1_c14820 are separated by 69 nucleotidesPGA1_c14820 and PGA1_c14830 are separated by 45 nucleotides PGA1_c14800: PGA1_c14800 - nitrogen regulation protein NtrY, at 1,533,545 to 1,535,824 _c14800 PGA1_c14810: PGA1_c14810 - nitrogen assimilation regulatory protein NtrX, at 1,535,821 to 1,537,236 _c14810 PGA1_c14820: PGA1_c14820 - hypothetical protein, at 1,537,306 to 1,537,851 _c14820 PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273 _c14830 Position (kb) 1535 1536 1537 1538Strain fitness (log2 ratio) -2 -1 0 1 2at 1535.813 kb on + strandat 1535.813 kb on + strandat 1535.813 kb on + strandat 1537.224 kb on + strandat 1537.231 kb on + strandat 1537.241 kb on + strandat 1537.241 kb on + strandat 1537.275 kb on - strandat 1537.287 kb on + strandat 1537.295 kb on - strandat 1537.432 kb on + strand, within PGA1_c14820at 1537.477 kb on - strand, within PGA1_c14820at 1537.477 kb on - strand, within PGA1_c14820at 1537.492 kb on + strand, within PGA1_c14820at 1537.505 kb on - strand, within PGA1_c14820at 1537.522 kb on + strand, within PGA1_c14820at 1537.559 kb on - strand, within PGA1_c14820at 1537.653 kb on + strand, within PGA1_c14820at 1537.653 kb on + strand, within PGA1_c14820at 1537.658 kb on + strand, within PGA1_c14820at 1537.661 kb on - strand, within PGA1_c14820at 1537.661 kb on - strand, within PGA1_c14820at 1537.711 kb on + strand, within PGA1_c14820at 1537.719 kb on - strand, within PGA1_c14820at 1537.737 kb on + strand, within PGA1_c14820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,535,813 + -2.3
1,535,813 + +0.4
1,535,813 + +1.5
1,537,224 + -0.0
1,537,231 + +1.3
1,537,241 + +0.4
1,537,241 + +1.1
1,537,275 - -1.5
1,537,287 + +0.0
1,537,295 - -0.5
1,537,432 + PGA1_c14820 0.23 +0.9
1,537,477 - PGA1_c14820 0.31 -0.3
1,537,477 - PGA1_c14820 0.31 -1.3
1,537,492 + PGA1_c14820 0.34 +0.8
1,537,505 - PGA1_c14820 0.36 +0.5
1,537,522 + PGA1_c14820 0.40 +0.4
1,537,559 - PGA1_c14820 0.46 -0.5
1,537,653 + PGA1_c14820 0.64 +0.2
1,537,653 + PGA1_c14820 0.64 -0.1
1,537,658 + PGA1_c14820 0.64 -1.5
1,537,661 - PGA1_c14820 0.65 +2.7
1,537,661 - PGA1_c14820 0.65 +1.5
1,537,711 + PGA1_c14820 0.74 +0.5
1,537,719 - PGA1_c14820 0.76 +1.0
1,537,737 + PGA1_c14820 0.79 +1.8

Or see this region's nucleotide sequence