Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14770

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14760 and PGA1_c14770 are separated by 191 nucleotidesPGA1_c14770 and PGA1_c14780 are separated by 8 nucleotides PGA1_c14760: PGA1_c14760 - bifunctional enzyme IspDF, at 1,528,462 to 1,529,682 _c14760 PGA1_c14770: PGA1_c14770 - tRNA-dihydrouridine synthase DusB, at 1,529,874 to 1,530,887 _c14770 PGA1_c14780: PGA1_c14780 - nitrogen regulation protein NtrB, at 1,530,896 to 1,532,026 _c14780 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1528.957 kb on - strand, within PGA1_c14760at 1529.660 kb on + strandat 1529.716 kb on + strandat 1529.753 kb on - strandat 1529.805 kb on + strandat 1529.898 kb on + strandat 1530.026 kb on + strand, within PGA1_c14770at 1530.026 kb on + strand, within PGA1_c14770at 1530.034 kb on - strand, within PGA1_c14770at 1530.034 kb on - strand, within PGA1_c14770at 1530.074 kb on + strand, within PGA1_c14770at 1530.358 kb on + strand, within PGA1_c14770at 1530.363 kb on + strand, within PGA1_c14770at 1530.371 kb on - strand, within PGA1_c14770at 1530.443 kb on + strand, within PGA1_c14770at 1530.451 kb on - strand, within PGA1_c14770at 1530.487 kb on - strand, within PGA1_c14770at 1530.532 kb on - strand, within PGA1_c14770at 1530.661 kb on - strand, within PGA1_c14770at 1530.731 kb on - strand, within PGA1_c14770at 1530.785 kb on - strand, within PGA1_c14770at 1530.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,528,957 - PGA1_c14760 0.41 -0.3
1,529,660 + -3.2
1,529,716 + -0.7
1,529,753 - -1.6
1,529,805 + -0.0
1,529,898 + -0.8
1,530,026 + PGA1_c14770 0.15 -0.2
1,530,026 + PGA1_c14770 0.15 -0.3
1,530,034 - PGA1_c14770 0.16 +1.8
1,530,034 - PGA1_c14770 0.16 +0.4
1,530,074 + PGA1_c14770 0.20 +0.4
1,530,358 + PGA1_c14770 0.48 +0.3
1,530,363 + PGA1_c14770 0.48 +0.7
1,530,371 - PGA1_c14770 0.49 +0.7
1,530,443 + PGA1_c14770 0.56 -0.6
1,530,451 - PGA1_c14770 0.57 +2.4
1,530,487 - PGA1_c14770 0.60 -1.6
1,530,532 - PGA1_c14770 0.65 +0.5
1,530,661 - PGA1_c14770 0.78 +0.6
1,530,731 - PGA1_c14770 0.85 +0.2
1,530,785 - PGA1_c14770 0.90 +0.5
1,530,892 + +0.8

Or see this region's nucleotide sequence