Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14380

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14370 and PGA1_c14380 overlap by 4 nucleotidesPGA1_c14380 and PGA1_c14390 are separated by 603 nucleotides PGA1_c14370: PGA1_c14370 - DNA ligase LigA, at 1,491,431 to 1,493,689 _c14370 PGA1_c14380: PGA1_c14380 - ATP-dependent DNA helicase RecG, at 1,493,686 to 1,495,776 _c14380 PGA1_c14390: PGA1_c14390 - NifU homolog involved in Fe-S cluster formation, at 1,496,380 to 1,496,832 _c14390 Position (kb) 1493 1494 1495 1496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1493.869 kb on - strandat 1493.897 kb on - strand, within PGA1_c14380at 1493.915 kb on - strand, within PGA1_c14380at 1493.922 kb on + strand, within PGA1_c14380at 1493.942 kb on + strand, within PGA1_c14380at 1494.043 kb on + strand, within PGA1_c14380at 1494.053 kb on + strand, within PGA1_c14380at 1494.111 kb on + strand, within PGA1_c14380at 1494.191 kb on - strand, within PGA1_c14380at 1494.275 kb on + strand, within PGA1_c14380at 1494.362 kb on - strand, within PGA1_c14380at 1494.367 kb on - strand, within PGA1_c14380at 1494.524 kb on + strand, within PGA1_c14380at 1494.548 kb on - strand, within PGA1_c14380at 1494.879 kb on + strand, within PGA1_c14380at 1494.892 kb on - strand, within PGA1_c14380at 1494.910 kb on - strand, within PGA1_c14380at 1494.929 kb on - strand, within PGA1_c14380at 1495.056 kb on + strand, within PGA1_c14380at 1495.056 kb on + strand, within PGA1_c14380at 1495.061 kb on + strand, within PGA1_c14380at 1495.124 kb on + strand, within PGA1_c14380at 1495.328 kb on + strand, within PGA1_c14380at 1495.342 kb on - strand, within PGA1_c14380at 1495.438 kb on + strand, within PGA1_c14380at 1495.542 kb on - strand, within PGA1_c14380at 1495.633 kb on + strandat 1495.743 kb on + strandat 1495.779 kb on - strandat 1495.787 kb on + strandat 1495.787 kb on + strandat 1495.787 kb on + strandat 1495.795 kb on - strandat 1495.885 kb on + strandat 1495.991 kb on + strandat 1496.064 kb on + strandat 1496.083 kb on + strandat 1496.084 kb on + strandat 1496.160 kb on + strandat 1496.160 kb on + strandat 1496.242 kb on + strandat 1496.259 kb on + strandat 1496.261 kb on + strandat 1496.267 kb on - strandat 1496.618 kb on + strand, within PGA1_c14390at 1496.766 kb on + strand, within PGA1_c14390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,493,869 - -1.9
1,493,897 - PGA1_c14380 0.10 -3.3
1,493,915 - PGA1_c14380 0.11 -2.3
1,493,922 + PGA1_c14380 0.11 -1.8
1,493,942 + PGA1_c14380 0.12 -0.6
1,494,043 + PGA1_c14380 0.17 -2.1
1,494,053 + PGA1_c14380 0.18 -2.5
1,494,111 + PGA1_c14380 0.20 -2.1
1,494,191 - PGA1_c14380 0.24 -2.1
1,494,275 + PGA1_c14380 0.28 -2.1
1,494,362 - PGA1_c14380 0.32 -1.1
1,494,367 - PGA1_c14380 0.33 -1.8
1,494,524 + PGA1_c14380 0.40 -1.9
1,494,548 - PGA1_c14380 0.41 -0.6
1,494,879 + PGA1_c14380 0.57 -1.8
1,494,892 - PGA1_c14380 0.58 +0.5
1,494,910 - PGA1_c14380 0.59 -2.1
1,494,929 - PGA1_c14380 0.59 +0.3
1,495,056 + PGA1_c14380 0.66 -2.3
1,495,056 + PGA1_c14380 0.66 -2.7
1,495,061 + PGA1_c14380 0.66 -2.1
1,495,124 + PGA1_c14380 0.69 -2.9
1,495,328 + PGA1_c14380 0.79 -1.7
1,495,342 - PGA1_c14380 0.79 -1.1
1,495,438 + PGA1_c14380 0.84 -2.2
1,495,542 - PGA1_c14380 0.89 -2.3
1,495,633 + -0.9
1,495,743 + -0.8
1,495,779 - +1.2
1,495,787 + -1.5
1,495,787 + +2.5
1,495,787 + -0.8
1,495,795 - -1.5
1,495,885 + -1.8
1,495,991 + -1.3
1,496,064 + -1.0
1,496,083 + +0.9
1,496,084 + +0.1
1,496,160 + -1.6
1,496,160 + +0.2
1,496,242 + +0.2
1,496,259 + +0.4
1,496,261 + -2.3
1,496,267 - +0.5
1,496,618 + PGA1_c14390 0.53 -0.3
1,496,766 + PGA1_c14390 0.85 -1.3

Or see this region's nucleotide sequence