Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22265 and BWI76_RS22270 are separated by 254 nucleotides BWI76_RS22270 and BWI76_RS22275 are separated by 11 nucleotides
BWI76_RS22265: BWI76_RS22265 - NADH:flavorubredoxin oxidoreductase, at 4,640,264 to 4,641,397
_RS22265
BWI76_RS22270: BWI76_RS22270 - nickel transporter, at 4,641,652 to 4,642,665
_RS22270
BWI76_RS22275: BWI76_RS22275 - carbamoyltransferase HypF, at 4,642,677 to 4,644,896
_RS22275
Position (kb)
4641
4642
4643 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4640.663 kb on + strand, within BWI76_RS22265 at 4640.894 kb on - strand, within BWI76_RS22265 at 4641.366 kb on + strand at 4641.391 kb on - strand at 4641.528 kb on - strand at 4641.651 kb on - strand at 4641.721 kb on - strand at 4641.776 kb on - strand, within BWI76_RS22270 at 4641.839 kb on + strand, within BWI76_RS22270 at 4641.847 kb on - strand, within BWI76_RS22270 at 4641.893 kb on + strand, within BWI76_RS22270 at 4641.930 kb on - strand, within BWI76_RS22270 at 4642.218 kb on + strand, within BWI76_RS22270 at 4642.226 kb on - strand, within BWI76_RS22270 at 4642.582 kb on + strand at 4642.590 kb on - strand at 4642.671 kb on - strand at 4642.674 kb on + strand at 4642.682 kb on - strand at 4642.944 kb on + strand, within BWI76_RS22275 at 4642.973 kb on + strand, within BWI76_RS22275 at 4643.190 kb on + strand, within BWI76_RS22275 at 4643.292 kb on - strand, within BWI76_RS22275 at 4643.427 kb on - strand, within BWI76_RS22275 at 4643.592 kb on - strand, within BWI76_RS22275 at 4643.607 kb on - strand, within BWI76_RS22275
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 4,640,663 + BWI76_RS22265 0.35 +1.0 4,640,894 - BWI76_RS22265 0.56 -0.6 4,641,366 + +0.4 4,641,391 - +1.0 4,641,528 - -0.6 4,641,651 - +1.4 4,641,721 - +0.3 4,641,776 - BWI76_RS22270 0.12 -1.2 4,641,839 + BWI76_RS22270 0.18 -2.8 4,641,847 - BWI76_RS22270 0.19 -0.7 4,641,893 + BWI76_RS22270 0.24 -0.4 4,641,930 - BWI76_RS22270 0.27 -1.9 4,642,218 + BWI76_RS22270 0.56 -1.9 4,642,226 - BWI76_RS22270 0.57 -1.8 4,642,582 + +0.6 4,642,590 - -0.8 4,642,671 - -0.7 4,642,674 + -0.1 4,642,682 - -1.0 4,642,944 + BWI76_RS22275 0.12 -3.4 4,642,973 + BWI76_RS22275 0.13 +0.4 4,643,190 + BWI76_RS22275 0.23 +0.2 4,643,292 - BWI76_RS22275 0.28 -1.1 4,643,427 - BWI76_RS22275 0.34 -1.6 4,643,592 - BWI76_RS22275 0.41 +0.6 4,643,607 - BWI76_RS22275 0.42 -0.7
Or see this region's nucleotide sequence