Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09365 and BWI76_RS09370 are separated by 9 nucleotides BWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotides BWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotides BWI76_RS09380 and BWI76_RS09385 overlap by 8 nucleotides
BWI76_RS09365: BWI76_RS09365 - phage tail sheath protein, at 1,965,488 to 1,966,660
_RS09365
BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185
_RS09370
BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537
_RS09375
BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671
_RS09380
BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291
_RS09385
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -1
0
1
2
3 at 1965.740 kb on - strand, within BWI76_RS09365 at 1965.754 kb on + strand, within BWI76_RS09365 at 1965.847 kb on + strand, within BWI76_RS09365 at 1965.922 kb on - strand, within BWI76_RS09365 at 1966.008 kb on + strand, within BWI76_RS09365 at 1966.026 kb on - strand at 1966.209 kb on - strand, within BWI76_RS09365 at 1966.219 kb on - strand, within BWI76_RS09365 at 1966.350 kb on - strand, within BWI76_RS09365 at 1966.449 kb on + strand, within BWI76_RS09365 at 1966.667 kb on + strand at 1966.667 kb on + strand at 1967.185 kb on + strand at 1967.347 kb on + strand, within BWI76_RS09375 at 1967.482 kb on + strand, within BWI76_RS09375 at 1967.746 kb on + strand at 1968.142 kb on - strand, within BWI76_RS09385
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,965,740 - BWI76_RS09365 0.21 +0.5 1,965,754 + BWI76_RS09365 0.23 +1.3 1,965,847 + BWI76_RS09365 0.31 +0.6 1,965,922 - BWI76_RS09365 0.37 +0.0 1,966,008 + BWI76_RS09365 0.44 +0.1 1,966,026 - +3.7 1,966,209 - BWI76_RS09365 0.61 -0.4 1,966,219 - BWI76_RS09365 0.62 +0.6 1,966,350 - BWI76_RS09365 0.73 +0.2 1,966,449 + BWI76_RS09365 0.82 +0.4 1,966,667 + +0.1 1,966,667 + -0.5 1,967,185 + +1.0 1,967,347 + BWI76_RS09375 0.36 -0.3 1,967,482 + BWI76_RS09375 0.81 +0.3 1,967,746 + -1.5 1,968,142 - BWI76_RS09385 0.18 -0.3
Or see this region's nucleotide sequence