Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05675

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05670 and BWI76_RS05675 are separated by 123 nucleotidesBWI76_RS05675 and BWI76_RS05680 are separated by 438 nucleotides BWI76_RS05670: BWI76_RS05670 - porin, at 1,190,732 to 1,192,072 _RS05670 BWI76_RS05675: BWI76_RS05675 - MFS transporter, at 1,192,196 to 1,193,593 _RS05675 BWI76_RS05680: BWI76_RS05680 - LacI family transcriptional regulator, at 1,194,032 to 1,195,063 _RS05680 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1191.264 kb on + strand, within BWI76_RS05670at 1191.481 kb on + strand, within BWI76_RS05670at 1191.500 kb on - strand, within BWI76_RS05670at 1191.603 kb on - strand, within BWI76_RS05670at 1191.675 kb on - strand, within BWI76_RS05670at 1191.836 kb on - strand, within BWI76_RS05670at 1191.855 kb on + strand, within BWI76_RS05670at 1191.947 kb on + strandat 1192.016 kb on + strandat 1192.023 kb on + strandat 1192.067 kb on + strandat 1192.111 kb on + strandat 1192.184 kb on + strandat 1192.329 kb on - strandat 1192.345 kb on + strand, within BWI76_RS05675at 1192.366 kb on + strand, within BWI76_RS05675at 1192.374 kb on - strand, within BWI76_RS05675at 1192.379 kb on - strand, within BWI76_RS05675at 1192.388 kb on + strand, within BWI76_RS05675at 1192.451 kb on + strand, within BWI76_RS05675at 1192.468 kb on + strand, within BWI76_RS05675at 1192.469 kb on + strand, within BWI76_RS05675at 1192.632 kb on - strand, within BWI76_RS05675at 1192.646 kb on + strand, within BWI76_RS05675at 1192.660 kb on - strand, within BWI76_RS05675at 1192.741 kb on - strand, within BWI76_RS05675at 1192.759 kb on + strand, within BWI76_RS05675at 1192.759 kb on + strand, within BWI76_RS05675at 1192.759 kb on + strand, within BWI76_RS05675at 1192.798 kb on + strand, within BWI76_RS05675at 1192.805 kb on - strand, within BWI76_RS05675at 1192.820 kb on + strand, within BWI76_RS05675at 1192.861 kb on - strand, within BWI76_RS05675at 1192.979 kb on + strand, within BWI76_RS05675at 1192.980 kb on - strand, within BWI76_RS05675at 1193.074 kb on - strand, within BWI76_RS05675at 1193.180 kb on - strand, within BWI76_RS05675at 1193.254 kb on - strand, within BWI76_RS05675at 1193.260 kb on + strand, within BWI76_RS05675at 1193.336 kb on - strand, within BWI76_RS05675at 1193.380 kb on + strand, within BWI76_RS05675at 1193.587 kb on - strandat 1193.595 kb on + strandat 1193.605 kb on + strandat 1193.646 kb on + strandat 1193.669 kb on - strandat 1193.913 kb on - strandat 1194.009 kb on + strandat 1194.323 kb on - strand, within BWI76_RS05680at 1194.407 kb on + strand, within BWI76_RS05680at 1194.473 kb on + strand, within BWI76_RS05680at 1194.530 kb on - strand, within BWI76_RS05680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,191,264 + BWI76_RS05670 0.40 +0.1
1,191,481 + BWI76_RS05670 0.56 -3.2
1,191,500 - BWI76_RS05670 0.57 +0.2
1,191,603 - BWI76_RS05670 0.65 -1.0
1,191,675 - BWI76_RS05670 0.70 +0.7
1,191,836 - BWI76_RS05670 0.82 +0.2
1,191,855 + BWI76_RS05670 0.84 -2.8
1,191,947 + -0.7
1,192,016 + -0.4
1,192,023 + -0.9
1,192,067 + -0.7
1,192,111 + -0.1
1,192,184 + -2.7
1,192,329 - -2.1
1,192,345 + BWI76_RS05675 0.11 -0.4
1,192,366 + BWI76_RS05675 0.12 +0.2
1,192,374 - BWI76_RS05675 0.13 -1.2
1,192,379 - BWI76_RS05675 0.13 +0.7
1,192,388 + BWI76_RS05675 0.14 +2.9
1,192,451 + BWI76_RS05675 0.18 +2.6
1,192,468 + BWI76_RS05675 0.19 +0.5
1,192,469 + BWI76_RS05675 0.20 -3.1
1,192,632 - BWI76_RS05675 0.31 +1.7
1,192,646 + BWI76_RS05675 0.32 -0.1
1,192,660 - BWI76_RS05675 0.33 +0.8
1,192,741 - BWI76_RS05675 0.39 -0.2
1,192,759 + BWI76_RS05675 0.40 +2.8
1,192,759 + BWI76_RS05675 0.40 +0.0
1,192,759 + BWI76_RS05675 0.40 +0.7
1,192,798 + BWI76_RS05675 0.43 +0.7
1,192,805 - BWI76_RS05675 0.44 +2.0
1,192,820 + BWI76_RS05675 0.45 -0.9
1,192,861 - BWI76_RS05675 0.48 -1.7
1,192,979 + BWI76_RS05675 0.56 +0.4
1,192,980 - BWI76_RS05675 0.56 +1.4
1,193,074 - BWI76_RS05675 0.63 -1.5
1,193,180 - BWI76_RS05675 0.70 -0.9
1,193,254 - BWI76_RS05675 0.76 +1.0
1,193,260 + BWI76_RS05675 0.76 -0.5
1,193,336 - BWI76_RS05675 0.82 -1.0
1,193,380 + BWI76_RS05675 0.85 +1.1
1,193,587 - -1.6
1,193,595 + +0.1
1,193,605 + +0.1
1,193,646 + -0.0
1,193,669 - +0.8
1,193,913 - -0.1
1,194,009 + +0.5
1,194,323 - BWI76_RS05680 0.28 +0.3
1,194,407 + BWI76_RS05680 0.36 +0.7
1,194,473 + BWI76_RS05680 0.43 -3.0
1,194,530 - BWI76_RS05680 0.48 +0.4

Or see this region's nucleotide sequence