Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13105

Experiment: reconstituted MRS with Lacto-N-tetraose 7.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS13100 and BBR_RS13105 are separated by 162 nucleotidesBBR_RS13105 and BBR_RS13110 are separated by 93 nucleotidesBBR_RS13110 and BBR_RS13115 are separated by 126 nucleotides BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874 _RS13100 BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 BBR_RS13110: BBR_RS13110 - type III pantothenate kinase, at 716,552 to 717,322 _RS13110 BBR_RS13115: BBR_RS13115 - Solute-binding protein of ABC transporter system for peptide, at 717,449 to 719,083 _RS13115 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 714.060 kb on - strand, within BBR_RS13100at 714.060 kb on - strand, within BBR_RS13100at 714.112 kb on - strand, within BBR_RS13100at 714.167 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.206 kb on - strand, within BBR_RS13100at 714.232 kb on - strand, within BBR_RS13100at 714.242 kb on - strand, within BBR_RS13100at 714.267 kb on - strand, within BBR_RS13100at 714.343 kb on + strand, within BBR_RS13100at 714.351 kb on - strand, within BBR_RS13100at 714.363 kb on + strand, within BBR_RS13100at 714.454 kb on + strand, within BBR_RS13100at 714.481 kb on - strand, within BBR_RS13100at 714.504 kb on + strand, within BBR_RS13100at 714.504 kb on - strand, within BBR_RS13100at 714.542 kb on + strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.616 kb on + strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.655 kb on + strand, within BBR_RS13100at 714.688 kb on + strand, within BBR_RS13100at 714.706 kb on - strand, within BBR_RS13100at 714.725 kb on + strand, within BBR_RS13100at 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.768 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.851 kb on + strandat 714.859 kb on - strandat 714.859 kb on - strandat 714.869 kb on + strandat 714.911 kb on - strandat 714.956 kb on - strandat 714.957 kb on + strandat 714.975 kb on + strandat 714.981 kb on + strandat 715.021 kb on + strandat 716.474 kb on - strandat 716.527 kb on - strandat 716.527 kb on - strandat 716.604 kb on + strandat 716.639 kb on - strand, within BBR_RS13110at 716.670 kb on + strand, within BBR_RS13110at 716.671 kb on + strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.747 kb on - strand, within BBR_RS13110at 716.765 kb on + strand, within BBR_RS13110at 716.842 kb on + strand, within BBR_RS13110at 716.901 kb on - strand, within BBR_RS13110at 716.903 kb on - strand, within BBR_RS13110at 716.970 kb on - strand, within BBR_RS13110at 717.031 kb on + strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.099 kb on - strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.118 kb on - strand, within BBR_RS13110at 717.125 kb on - strand, within BBR_RS13110at 717.126 kb on - strand, within BBR_RS13110at 717.135 kb on - strand, within BBR_RS13110at 717.163 kb on + strand, within BBR_RS13110at 717.171 kb on - strand, within BBR_RS13110at 717.216 kb on + strand, within BBR_RS13110at 717.218 kb on + strand, within BBR_RS13110at 717.388 kb on + strandat 717.391 kb on - strandat 717.391 kb on - strandat 717.396 kb on - strandat 717.396 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Lacto-N-tetraose 7.1 mM
remove
714,060 - BBR_RS13100 0.39 +0.4
714,060 - BBR_RS13100 0.39 +0.4
714,112 - BBR_RS13100 0.43 -0.6
714,167 + BBR_RS13100 0.47 -0.1
714,186 + BBR_RS13100 0.49 -1.0
714,186 + BBR_RS13100 0.49 +0.4
714,206 - BBR_RS13100 0.50 -0.1
714,232 - BBR_RS13100 0.52 +0.1
714,242 - BBR_RS13100 0.53 +0.0
714,267 - BBR_RS13100 0.55 -0.1
714,343 + BBR_RS13100 0.61 -0.7
714,351 - BBR_RS13100 0.61 -0.8
714,363 + BBR_RS13100 0.62 -0.1
714,454 + BBR_RS13100 0.69 -0.3
714,481 - BBR_RS13100 0.71 -0.4
714,504 + BBR_RS13100 0.72 -0.5
714,504 - BBR_RS13100 0.72 -1.0
714,542 + BBR_RS13100 0.75 -0.8
714,555 - BBR_RS13100 0.76 -0.2
714,555 - BBR_RS13100 0.76 -0.5
714,616 + BBR_RS13100 0.81 -1.1
714,624 - BBR_RS13100 0.81 -0.1
714,624 - BBR_RS13100 0.81 -0.2
714,624 - BBR_RS13100 0.81 +1.0
714,641 + BBR_RS13100 0.83 -0.4
714,641 + BBR_RS13100 0.83 +1.6
714,655 + BBR_RS13100 0.84 -0.5
714,688 + BBR_RS13100 0.86 +0.0
714,706 - BBR_RS13100 0.87 -0.5
714,725 + BBR_RS13100 0.89 -0.2
714,748 - -0.9
714,748 - +0.7
714,748 - -0.3
714,748 - +0.3
714,768 + -0.0
714,778 + -0.6
714,778 + +0.2
714,778 + -1.0
714,778 + +0.0
714,786 - +0.2
714,786 - -1.7
714,786 - -0.0
714,786 - +0.0
714,786 - +0.5
714,786 - -0.1
714,786 - -1.2
714,851 + +1.3
714,859 - -0.9
714,859 - -0.4
714,869 + +0.3
714,911 - -0.1
714,956 - +0.5
714,957 + +0.3
714,975 + -1.8
714,981 + +0.0
715,021 + +0.5
716,474 - +0.8
716,527 - -0.5
716,527 - -0.2
716,604 + +1.1
716,639 - BBR_RS13110 0.11 -0.2
716,670 + BBR_RS13110 0.15 -0.2
716,671 + BBR_RS13110 0.15 -0.9
716,737 - BBR_RS13110 0.24 +0.2
716,737 - BBR_RS13110 0.24 +0.5
716,739 + BBR_RS13110 0.24 +0.4
716,739 + BBR_RS13110 0.24 +0.1
716,739 + BBR_RS13110 0.24 +0.2
716,747 - BBR_RS13110 0.25 -0.4
716,765 + BBR_RS13110 0.28 +0.2
716,842 + BBR_RS13110 0.38 -0.7
716,901 - BBR_RS13110 0.45 -1.4
716,903 - BBR_RS13110 0.46 -0.4
716,970 - BBR_RS13110 0.54 +0.3
717,031 + BBR_RS13110 0.62 -0.4
717,039 - BBR_RS13110 0.63 -0.3
717,039 - BBR_RS13110 0.63 -0.1
717,099 - BBR_RS13110 0.71 -0.6
717,117 + BBR_RS13110 0.73 -0.0
717,117 + BBR_RS13110 0.73 -0.0
717,117 + BBR_RS13110 0.73 +0.6
717,118 - BBR_RS13110 0.73 +0.6
717,125 - BBR_RS13110 0.74 +0.1
717,126 - BBR_RS13110 0.74 +0.5
717,135 - BBR_RS13110 0.76 -0.4
717,163 + BBR_RS13110 0.79 -0.5
717,171 - BBR_RS13110 0.80 -0.0
717,216 + BBR_RS13110 0.86 -0.4
717,218 + BBR_RS13110 0.86 +0.9
717,388 + +0.1
717,391 - -0.6
717,391 - -0.2
717,396 - +0.1
717,396 - +0.4

Or see this region's nucleotide sequence