Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0975 and Dshi_0976 are separated by 217 nucleotides Dshi_0976 and Dshi_R0022 are separated by 197 nucleotides Dshi_R0022 and Dshi_0977 are separated by 294 nucleotides
Dshi_0975: Dshi_0975 - transcriptional regulator, LacI family (RefSeq), at 996,698 to 997,732
_0975
Dshi_0976: Dshi_0976 - resolvase-like protein (RefSeq), at 997,950 to 998,168
_0976
Dshi_R0022: Dshi_R0022 - tRNA-Thr (RefSeq), at 998,366 to 998,440
_R0022
Dshi_0977: Dshi_0977 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 998,735 to 1,000,003
_0977
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 997.080 kb on + strand, within Dshi_0975 at 997.114 kb on + strand, within Dshi_0975 at 997.231 kb on - strand, within Dshi_0975 at 997.431 kb on - strand, within Dshi_0975 at 997.521 kb on - strand, within Dshi_0975 at 997.597 kb on - strand, within Dshi_0975 at 997.805 kb on + strand at 997.846 kb on + strand at 997.847 kb on + strand at 997.855 kb on - strand at 997.857 kb on + strand at 997.865 kb on - strand at 997.865 kb on - strand at 997.875 kb on - strand at 997.960 kb on + strand at 997.995 kb on - strand, within Dshi_0976 at 998.019 kb on + strand, within Dshi_0976 at 998.089 kb on + strand, within Dshi_0976 at 998.231 kb on + strand at 998.231 kb on + strand at 998.256 kb on - strand at 998.282 kb on - strand at 998.305 kb on - strand at 998.534 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.546 kb on - strand at 998.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 997,080 + Dshi_0975 0.37 -1.1 997,114 + Dshi_0975 0.40 -2.2 997,231 - Dshi_0975 0.51 -1.2 997,431 - Dshi_0975 0.71 +0.2 997,521 - Dshi_0975 0.80 -2.9 997,597 - Dshi_0975 0.87 -3.0 997,805 + +0.7 997,846 + -0.3 997,847 + -0.2 997,855 - +0.4 997,857 + -0.4 997,865 - +0.8 997,865 - +1.0 997,875 - +0.4 997,960 + +0.1 997,995 - Dshi_0976 0.21 -0.8 998,019 + Dshi_0976 0.32 -0.1 998,089 + Dshi_0976 0.63 -0.5 998,231 + -0.1 998,231 + -0.4 998,256 - -0.0 998,282 - +0.6 998,305 - +0.5 998,534 - -0.6 998,535 - -0.6 998,535 - +0.4 998,535 - -0.3 998,546 - +0.5 998,590 - -0.4
Or see this region's nucleotide sequence