Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0971 and Dshi_0972 are separated by 12 nucleotides Dshi_0972 and Dshi_0973 are separated by 10 nucleotides Dshi_0973 and Dshi_0974 are separated by 113 nucleotides
Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442
_0971
Dshi_0972: Dshi_0972 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 993,455 to 994,285
_0972
Dshi_0973: Dshi_0973 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 994,296 to 995,162
_0973
Dshi_0974: Dshi_0974 - extracellular solute-binding protein family 1 (RefSeq), at 995,276 to 996,583
_0974
Position (kb) 994
995
996 Strain fitness (log2 ratio) -1
0
1 at 993.324 kb on - strand, within Dshi_0971 at 993.373 kb on + strand at 993.408 kb on - strand at 993.539 kb on + strand, within Dshi_0972 at 993.547 kb on - strand, within Dshi_0972 at 993.547 kb on - strand, within Dshi_0972 at 993.549 kb on + strand, within Dshi_0972 at 993.557 kb on - strand, within Dshi_0972 at 993.574 kb on - strand, within Dshi_0972 at 993.581 kb on - strand, within Dshi_0972 at 993.634 kb on + strand, within Dshi_0972 at 993.695 kb on - strand, within Dshi_0972 at 993.699 kb on + strand, within Dshi_0972 at 993.886 kb on + strand, within Dshi_0972 at 993.909 kb on + strand, within Dshi_0972 at 993.917 kb on - strand, within Dshi_0972 at 994.017 kb on + strand, within Dshi_0972 at 994.115 kb on - strand, within Dshi_0972 at 994.181 kb on - strand, within Dshi_0972 at 994.181 kb on - strand, within Dshi_0972 at 994.222 kb on + strand at 994.230 kb on + strand at 994.230 kb on + strand at 994.235 kb on + strand at 994.243 kb on - strand at 994.243 kb on - strand at 994.253 kb on - strand at 994.384 kb on - strand, within Dshi_0973 at 994.447 kb on - strand, within Dshi_0973 at 994.544 kb on - strand, within Dshi_0973 at 994.600 kb on + strand, within Dshi_0973 at 994.641 kb on - strand, within Dshi_0973 at 994.679 kb on + strand, within Dshi_0973 at 994.689 kb on + strand, within Dshi_0973 at 994.740 kb on - strand, within Dshi_0973 at 994.853 kb on - strand, within Dshi_0973 at 994.915 kb on - strand, within Dshi_0973 at 994.941 kb on + strand, within Dshi_0973 at 994.954 kb on - strand, within Dshi_0973 at 995.005 kb on + strand, within Dshi_0973 at 995.037 kb on - strand, within Dshi_0973 at 995.173 kb on - strand at 995.185 kb on - strand at 995.317 kb on - strand at 995.323 kb on - strand at 995.323 kb on - strand at 995.426 kb on - strand, within Dshi_0974 at 995.578 kb on - strand, within Dshi_0974 at 995.584 kb on - strand, within Dshi_0974 at 995.584 kb on - strand, within Dshi_0974 at 995.686 kb on + strand, within Dshi_0974 at 995.820 kb on + strand, within Dshi_0974 at 995.828 kb on - strand, within Dshi_0974 at 995.851 kb on + strand, within Dshi_0974 at 995.952 kb on + strand, within Dshi_0974 at 995.970 kb on - strand, within Dshi_0974 at 995.977 kb on + strand, within Dshi_0974 at 995.977 kb on + strand, within Dshi_0974
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 993,324 - Dshi_0971 0.88 +0.2 993,373 + +0.6 993,408 - -0.2 993,539 + Dshi_0972 0.10 +1.4 993,547 - Dshi_0972 0.11 +0.2 993,547 - Dshi_0972 0.11 +0.6 993,549 + Dshi_0972 0.11 -0.4 993,557 - Dshi_0972 0.12 -0.7 993,574 - Dshi_0972 0.14 -0.0 993,581 - Dshi_0972 0.15 -0.0 993,634 + Dshi_0972 0.22 +1.1 993,695 - Dshi_0972 0.29 +0.7 993,699 + Dshi_0972 0.29 +0.1 993,886 + Dshi_0972 0.52 +0.0 993,909 + Dshi_0972 0.55 -0.6 993,917 - Dshi_0972 0.56 -0.1 994,017 + Dshi_0972 0.68 -1.4 994,115 - Dshi_0972 0.79 +0.3 994,181 - Dshi_0972 0.87 +0.5 994,181 - Dshi_0972 0.87 -1.3 994,222 + -0.5 994,230 + -0.9 994,230 + -0.5 994,235 + +0.1 994,243 - -0.5 994,243 - +0.8 994,253 - +1.4 994,384 - Dshi_0973 0.10 +0.1 994,447 - Dshi_0973 0.17 -0.4 994,544 - Dshi_0973 0.29 +1.2 994,600 + Dshi_0973 0.35 -0.3 994,641 - Dshi_0973 0.40 +0.1 994,679 + Dshi_0973 0.44 -1.2 994,689 + Dshi_0973 0.45 -0.7 994,740 - Dshi_0973 0.51 -0.9 994,853 - Dshi_0973 0.64 -0.1 994,915 - Dshi_0973 0.71 -0.3 994,941 + Dshi_0973 0.74 -0.4 994,954 - Dshi_0973 0.76 -0.0 995,005 + Dshi_0973 0.82 -0.2 995,037 - Dshi_0973 0.85 -0.6 995,173 - +0.8 995,185 - +0.7 995,317 - -1.0 995,323 - -1.4 995,323 - +0.2 995,426 - Dshi_0974 0.11 -0.3 995,578 - Dshi_0974 0.23 -1.4 995,584 - Dshi_0974 0.24 +0.3 995,584 - Dshi_0974 0.24 +0.1 995,686 + Dshi_0974 0.31 -0.3 995,820 + Dshi_0974 0.42 -0.2 995,828 - Dshi_0974 0.42 -0.1 995,851 + Dshi_0974 0.44 +0.1 995,952 + Dshi_0974 0.52 -1.6 995,970 - Dshi_0974 0.53 -0.0 995,977 + Dshi_0974 0.54 -0.8 995,977 + Dshi_0974 0.54 +0.3
Or see this region's nucleotide sequence