Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0015 and Dshi_0016 are separated by 451 nucleotides Dshi_0016 and Dshi_0017 are separated by 89 nucleotides Dshi_0017 and Dshi_0018 are separated by 159 nucleotides
Dshi_0015: Dshi_0015 - ribonuclease R (RefSeq), at 15,472 to 17,727
_0015
Dshi_0016: Dshi_0016 - lytic murein transglycosylase (RefSeq), at 18,179 to 19,426
_0016
Dshi_0017: Dshi_0017 - hypothetical protein (RefSeq), at 19,516 to 20,166
_0017
Dshi_0018: Dshi_0018 - multicopper oxidase type 2 (RefSeq), at 20,326 to 22,629
_0018
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 17.196 kb on - strand, within Dshi_0015 at 17.289 kb on + strand, within Dshi_0015 at 17.319 kb on + strand, within Dshi_0015 at 17.373 kb on + strand, within Dshi_0015 at 17.390 kb on + strand, within Dshi_0015 at 17.391 kb on + strand, within Dshi_0015 at 17.418 kb on + strand, within Dshi_0015 at 17.585 kb on + strand at 17.721 kb on + strand at 17.729 kb on - strand at 17.742 kb on - strand at 17.742 kb on - strand at 17.755 kb on - strand at 17.865 kb on - strand at 17.877 kb on - strand at 17.970 kb on - strand at 18.096 kb on - strand at 18.176 kb on - strand at 18.184 kb on - strand at 18.246 kb on + strand at 18.287 kb on + strand at 18.297 kb on - strand at 18.309 kb on - strand, within Dshi_0016 at 18.468 kb on - strand, within Dshi_0016 at 18.478 kb on - strand, within Dshi_0016 at 18.532 kb on + strand, within Dshi_0016 at 18.611 kb on + strand, within Dshi_0016 at 18.768 kb on + strand, within Dshi_0016 at 18.769 kb on + strand, within Dshi_0016 at 18.770 kb on - strand, within Dshi_0016 at 18.791 kb on - strand, within Dshi_0016 at 18.883 kb on + strand, within Dshi_0016 at 18.931 kb on + strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.975 kb on + strand, within Dshi_0016 at 19.150 kb on + strand, within Dshi_0016 at 19.152 kb on - strand at 19.181 kb on + strand, within Dshi_0016 at 19.218 kb on - strand, within Dshi_0016 at 19.223 kb on + strand, within Dshi_0016 at 19.257 kb on - strand, within Dshi_0016 at 19.361 kb on - strand at 19.368 kb on + strand at 19.376 kb on - strand at 19.389 kb on + strand at 19.477 kb on + strand at 19.498 kb on + strand at 19.506 kb on - strand at 19.599 kb on - strand, within Dshi_0017 at 19.680 kb on - strand, within Dshi_0017 at 19.924 kb on + strand, within Dshi_0017 at 20.047 kb on - strand, within Dshi_0017 at 20.071 kb on - strand, within Dshi_0017 at 20.112 kb on + strand at 20.120 kb on - strand at 20.172 kb on - strand at 20.270 kb on - strand at 20.373 kb on + strand at 20.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 17,196 - Dshi_0015 0.76 -0.8 17,289 + Dshi_0015 0.81 +0.4 17,319 + Dshi_0015 0.82 +0.0 17,373 + Dshi_0015 0.84 -0.7 17,390 + Dshi_0015 0.85 -0.1 17,391 + Dshi_0015 0.85 +0.2 17,418 + Dshi_0015 0.86 -0.9 17,585 + +0.7 17,721 + +0.0 17,729 - +0.0 17,742 - +0.2 17,742 - -0.7 17,755 - +0.0 17,865 - +0.1 17,877 - +1.2 17,970 - +0.6 18,096 - -0.3 18,176 - +0.2 18,184 - -0.1 18,246 + +0.6 18,287 + -0.6 18,297 - -0.4 18,309 - Dshi_0016 0.10 -1.0 18,468 - Dshi_0016 0.23 -0.2 18,478 - Dshi_0016 0.24 +0.3 18,532 + Dshi_0016 0.28 +0.4 18,611 + Dshi_0016 0.35 -0.6 18,768 + Dshi_0016 0.47 +0.1 18,769 + Dshi_0016 0.47 -0.1 18,770 - Dshi_0016 0.47 +0.0 18,791 - Dshi_0016 0.49 -0.4 18,883 + Dshi_0016 0.56 +0.1 18,931 + Dshi_0016 0.60 +0.3 18,939 - Dshi_0016 0.61 -0.2 18,939 - Dshi_0016 0.61 -1.0 18,939 - Dshi_0016 0.61 -0.1 18,975 + Dshi_0016 0.64 -0.4 19,150 + Dshi_0016 0.78 +0.1 19,152 - -1.7 19,181 + Dshi_0016 0.80 -0.9 19,218 - Dshi_0016 0.83 -0.9 19,223 + Dshi_0016 0.84 -0.7 19,257 - Dshi_0016 0.86 -0.5 19,361 - +1.4 19,368 + +1.0 19,376 - -0.0 19,389 + +0.1 19,477 + -0.7 19,498 + +1.1 19,506 - -0.2 19,599 - Dshi_0017 0.13 -0.5 19,680 - Dshi_0017 0.25 -0.1 19,924 + Dshi_0017 0.63 -0.9 20,047 - Dshi_0017 0.82 +0.1 20,071 - Dshi_0017 0.85 -1.1 20,112 + -0.9 20,120 - -0.2 20,172 - -0.6 20,270 - +1.4 20,373 + +0.1 20,415 + -0.8
Or see this region's nucleotide sequence