Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06363

Experiment: Gallic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06360 and H281DRAFT_06361 are separated by 109 nucleotidesH281DRAFT_06361 and H281DRAFT_06362 are separated by 94 nucleotidesH281DRAFT_06362 and H281DRAFT_06363 are separated by 89 nucleotidesH281DRAFT_06363 and H281DRAFT_06364 are separated by 39 nucleotidesH281DRAFT_06364 and H281DRAFT_06365 are separated by 78 nucleotides H281DRAFT_06360: H281DRAFT_06360 - pilus assembly protein Flp/PilA, at 33,469 to 33,642 _06360 H281DRAFT_06361: H281DRAFT_06361 - pilus assembly protein Flp/PilA, at 33,752 to 33,925 _06361 H281DRAFT_06362: H281DRAFT_06362 - prepilin peptidase CpaA, at 34,020 to 34,544 _06362 H281DRAFT_06363: H281DRAFT_06363 - hypothetical protein, at 34,634 to 36,019 _06363 H281DRAFT_06364: H281DRAFT_06364 - pilus assembly protein CpaB, at 36,059 to 36,895 _06364 H281DRAFT_06365: H281DRAFT_06365 - pilus assembly protein CpaC, at 36,974 to 38,701 _06365 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -1 0 1at 33.645 kb on - strandat 33.679 kb on + strandat 34.719 kb on + strandat 34.937 kb on + strand, within H281DRAFT_06363at 35.255 kb on + strand, within H281DRAFT_06363at 35.268 kb on + strand, within H281DRAFT_06363at 35.462 kb on - strand, within H281DRAFT_06363

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
remove
33,645 - -0.8
33,679 + +0.6
34,719 + -0.0
34,937 + H281DRAFT_06363 0.22 +0.5
35,255 + H281DRAFT_06363 0.45 +0.9
35,268 + H281DRAFT_06363 0.46 +0.9
35,462 - H281DRAFT_06363 0.60 +1.1

Or see this region's nucleotide sequence